Ecen012007.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:487211-498510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.17 13 7.3 1.1 2 23 139 160 138 160 0.91 2 22 0.00047 0.037 15.3 0.6 1 23 164 187 164 187 0.96 3 22 0.073 5.8 8.4 0.0 3 21 193 211 192 212 0.94 4 22 0.0007 0.055 14.7 0.2 3 23 221 242 220 242 0.91 5 22 0.089 7 8.1 2.4 1 23 249 272 249 272 0.93 6 22 1.4 1.1e+02 4.3 2.3 1 11 276 286 276 290 0.84 7 22 3.9 3.1e+02 2.9 0.0 2 23 562 584 561 584 0.87 8 22 0.07 5.5 8.4 1.4 2 23 608 629 607 629 0.91 9 22 0.016 1.2 10.5 0.2 1 23 633 656 633 656 0.95 10 22 5 4e+02 2.6 0.1 3 23 924 945 922 945 0.86 11 22 5.2 4.1e+02 2.5 0.0 2 23 969 991 968 991 0.86 12 22 0.07 5.5 8.4 1.4 2 23 1015 1036 1014 1036 0.91 13 22 0.26 20 6.6 0.3 1 23 1040 1063 1040 1063 0.95 14 22 1.6 1.2e+02 4.2 0.1 2 23 1122 1144 1121 1144 0.96 15 22 0.049 3.9 8.9 0.5 2 23 1165 1186 1164 1186 0.90 16 22 5.1e-05 0.004 18.3 1.7 1 23 1190 1213 1190 1213 0.97 17 22 0.058 4.5 8.7 3.6 1 21 1220 1240 1220 1241 0.92 18 22 0.013 1 10.7 0.4 1 23 1248 1271 1248 1271 0.93 19 22 0.25 20 6.7 4.1 1 23 1278 1301 1278 1301 0.79 20 22 0.0058 0.46 11.8 1.8 1 23 1306 1328 1306 1328 0.95 21 22 1.2e-06 9.3e-05 23.4 0.8 1 20 1334 1353 1334 1356 0.95 22 22 0.00031 0.025 15.8 4.2 1 23 1362 1385 1362 1385 0.98
Sequence Information
- Coding Sequence
- ATGTGGCTCAAAGTACCTAAAACACCTAAACCGTTGCTGGATATTACGACACTTAGCAAAGCAGATCAGAACGCTGTGCACTTGCTTCGTAACACTACAGCAATCCCTTATAGATTGTTGAACGTTAGATCGATCATTCCATGCTTTGCTTGCGGATGCAAATTTCTTGACCCTTTTCTATTCAGAGACCATTTCATGGCCGAGCATCAATCGGTGGACAAGGCCAATGGTCTTTACAGTAAAAGCGTCAAGACTAGGGCTGATATAACAGACTTGAGCTGCCTCTTATGTACGCAACCGCTTGATAATTTAGACGAAGCGGCGGCACATCTTGTGCAGATGCACAAAATTGAGATCGATCTGAACGAGAAGCTTGGTCTGGTGCCGCTCAAGTTCTCAGAAAGGGGACTATGTCAATGCGCTGTATGCGGGATTAAGTTTAGTGCATTCAGAGAATTGTACAGGCACTCTGGCTCACATTTCGCCTACCACATCTGCGAGGTGTGTGGCATGCAATTTGAGACACCGAATGCATTAAATATGCATACTAAAACAAAGCATATTGAGGGACGGTTATGTGTTAAATGCAAAGCTGTATTTCCTTCCAGCGAGGCGCTGAGGCAACACGTAAAGGAAGAACGCTCTTGCAGTAATGGTTATTGCAGAATTTGCGATAAAGCCTTCGGGTACTGGCAGTCATTGCAGAAGCACAGAGAAGCTGTGCACGGTGTTGagaaaaaggtttatacatGCTCTGTGTGTCAAAAAGTGTTTGGGAAACGTATGCAGATGTATTTGCATTTCAAACAGAAGCATACAGATAGTTACAAGTGTAACATATGCGGCAAAAAGGTTTGTGGCTCTAAAGATGAAGAATGGACGACTACAGACGTGAAGGAAGCGATTCCTGTTGAAATCGATAAAAGTATTGGCGAAAATAATGAATGGATCACAAGCGATTTAGCGGATCACGGCAATACTGACGTCTCTAAAATCAAACAAGCTGATTGTGAAAACGTAGAGGACGAATGGGTTACAGTTGCCTTTAATGCTGCAGAACAACTACCGCTTGTAAGACCAAACTATAGCCCAGACGACAAAGGCACCGAGTGGGTAGTCACTGATACCGTAAAGGGCACAGATTACACAGACCAGACCAGACTCGATTCTAAAAAGTCTCGACCAAAAAGACACCAAAACTACATGGATGGGTATCGATTCATTTCTAAACTTTTCCCAAAAGTATCAAGAGTTGACAAGCCAGCTGCTTATTTTTTACCAACTAGGAGACAGCAACAAAACAACATGGAAGGTTATCAATTTGTCTCAAAGTTTGTGCTAAATTCTTTACGACCGGTTAAAAACAGACCAGTCGACCAGGTAAAATGGGAACGCGTTATTATCAATGAATCAGGTCCTGAAATGTGGCTCAAGGTTGCCAAAAATCAAAAAGCGTTGTTGGGTACTACGGATAAAAATGCTGTGCTCTTACTTCGTCACACTACAGCAATCCCTTATAATATGGAGTCCCAGAGGTCGGTTATTCCATGCTTTGCTTGCGAACAGAAATTTCTTGACCCTTTTCTTTTCAGAGACCATTTCATTGCAGAGCACCAATCGGTTGACAAGGTTCTTGGCTTTTATAGTAAAATCCTCAAGACGCGGGCTGATATAACAGACCTAAGATGCCTCTTATGTCAGCAACCGTTTGATAATTTAGACGAGGCGGCGGAACACCTGGTGCAGATGCACGAAATAAAGATTGATTTAAATGAGAAGCTCGGTCTGGTGCCGCTCAAATTCCCAGTAAGGGGATTATGTCAATGCGCTGTCTGCGGTAAAAAGGTTGTTACGTTCAAAGAACTGTACAGGCACTCTGGCTCACATTACGCGAACCATATCTGCGAGGTGTGTGGCATGCTGTTTGAGACAACTGGTGCATTAAACTTGCATGTAAAAGTAAAGCATAATGTTGAAGGAAGGTTATGTATTAAGTGCAAAGTTGTATTTCCTTCCGATGCGGAGCTGAGCCAACACTTAAAAGAAGTACGCACTTGCAATCCGGATGAAGAATGGACGACCACAGACGTGAAGGAAGATATTCCTGTTGAAATTGATAAAAGTATTGACGATAGTAATGAATGGATCACAACCGATTTAGCGGATCATGGCAATACTGCCGTCTCTCAAATCAAACAAGCTGATTGTTATGACGTAGAAGACGAATGGGATACATTTACCTTTAATGCTGCAGAACAACAACCGCCTCTAAGACTAAACTATAGCCCAGACGACATAGGCACCGAGTGGGTAGTCACTGATACCGTAAAGGGCACAGATTACACAGATCAGACTAGACTCGATTCTAAAAAGTCACCagcaaaaaaactaaaagaagAAGGAAACCAAAACAAAGAAGACCAAAACTACATAGACAGATATCGATTCAATTCTAAACTTTTCCCAAAAGTATCGAGAGTTGACAAGCCAGCTGCTAAATATATACGAACTAGGAGACAGCAACAAAATAACATGGAAGGATATCGATTCGTCTCAAAGCTTGTGCCAAATTCTCGGTCGGTTAAAACCCGACCAGTTTACCAGTTAAAATGGGACCGCCTTATTATTAATGAACTAGGTCCTGAAATGTTGCTCAATGAGGTCGAAAAAAGTCCAAAGGCGTTGGATACTACGGATAAAAACGCTATGCTCTTACTTCGTCACACTACAGCAATCCCTTTTAAAATGGAGATTAAATCGACTATTGCATGCTTTGCTTGCGAACAGAAATTTATTGACCCTTTTCTCTTCAGAGATCATTTTATTGCAAACCACCAATCGGTTGACAAGGTTCTTGGCTTTTGTAGTAAAGTCGTCAAGACGCGGGCTGATATAACAGACCTAAGTTGCCTGTTATGTAAGCAACCGTTTGATAATTTAGACGAAGCGGCGGAACATCTGGTGCAGATGCACGAAATAAAGATTGATTTAAATGAGAAGCTCGGTCTGGTGCCGCTCAAATTCCCAGTAAGGGGATTATGTCAATGCGCTGTCTGCGGTAAAAAGGTTGTTACGTTCAAAGAACTGTACAGGCACTCTGGCTCACATTACGCGAACCATATCTGCGAGGTGTGTGGCATGCTGTTTGAGACAACTGGTGCATTAAACTTTCATATAAAAGTAAAGCATAATGTTGAAGGAAGGCTTCCCGAGAACTGTGTGGTCTGTGTGTTCTGCTGTGAGGGTTTCGAGGACTGCGCTGTCTTTCGCAGCCACATGGAACTGGAGCACCAGGCTTTTCCCGTCAAAATGGCCTTCTCACACTGCTCTGAAGGCTTCGTAAAAGCAGACTGTTCTGATATCCGATGCCGAATCTGCTCCGAGCAGAGCGATACTCTTGAGGATATCGCTGTCCACTTGCGGAAAGTTCACAATAAACCGATGCAGTTGTCGGACCCTCTGGGAATACAACCCTTTAAACCTGATAAGCTAACGTGTGTAATTTGCGGAGCGAAATCCTTCAGCCTCAGGCAGCTCAGTCGACACACGCAATCGCACTTTCTCAGGTTCACATGCGAGTCCTGTGGCAAGTGCTATGCCACAAACACAGCTCTACAAGTACACATAAAATATACACATTTGATGAAAAAGGAACAACATTGCTGTAGGAAATGTAGGAAGATGTTCAGCTCTCAAGATGAAAGGAGAAATCATATACTGGAGACGAAGAAATGTTGGCCGTATTTATGCCATATGTGCGGCGAAAGATACGTATCTTGGAATGCGAAACAGGTGCATTTGAAAGAAGTCCATGGATTAGAAGATGGACCCCACACCTGTCCAGAATGTGGCAAGATTTTCACGGAAAAGAAAGTTTGTAAAGAACACTTTAAAATTACACACACGGACGACAATTATGTCTGTCCCTTTTGTGGTTTGAAGTTCACTGCCAAACATCATTACGATGAGCATATGGTTGGTCATACGAAGGAGAAACCCTACACGTGTTCAGTTTGTGACAAATCTTTCGCTAGAAAGAAGAATCTAACACAGCATATGTGGATTCATAGCGAATACAAAAGATTTGAATGCAAGATATGCAACAAAAAATTCAATCAGAAAGTCTGCCTGGTATCGCACAATAGAACAAATCATCCCGAGTTAACACAATTTGAGGAACAAAATGCTGGGGTCAAATATTTACTGTCGGTTCTAAAAAAGTGA
- Protein Sequence
- MWLKVPKTPKPLLDITTLSKADQNAVHLLRNTTAIPYRLLNVRSIIPCFACGCKFLDPFLFRDHFMAEHQSVDKANGLYSKSVKTRADITDLSCLLCTQPLDNLDEAAAHLVQMHKIEIDLNEKLGLVPLKFSERGLCQCAVCGIKFSAFRELYRHSGSHFAYHICEVCGMQFETPNALNMHTKTKHIEGRLCVKCKAVFPSSEALRQHVKEERSCSNGYCRICDKAFGYWQSLQKHREAVHGVEKKVYTCSVCQKVFGKRMQMYLHFKQKHTDSYKCNICGKKVCGSKDEEWTTTDVKEAIPVEIDKSIGENNEWITSDLADHGNTDVSKIKQADCENVEDEWVTVAFNAAEQLPLVRPNYSPDDKGTEWVVTDTVKGTDYTDQTRLDSKKSRPKRHQNYMDGYRFISKLFPKVSRVDKPAAYFLPTRRQQQNNMEGYQFVSKFVLNSLRPVKNRPVDQVKWERVIINESGPEMWLKVAKNQKALLGTTDKNAVLLLRHTTAIPYNMESQRSVIPCFACEQKFLDPFLFRDHFIAEHQSVDKVLGFYSKILKTRADITDLRCLLCQQPFDNLDEAAEHLVQMHEIKIDLNEKLGLVPLKFPVRGLCQCAVCGKKVVTFKELYRHSGSHYANHICEVCGMLFETTGALNLHVKVKHNVEGRLCIKCKVVFPSDAELSQHLKEVRTCNPDEEWTTTDVKEDIPVEIDKSIDDSNEWITTDLADHGNTAVSQIKQADCYDVEDEWDTFTFNAAEQQPPLRLNYSPDDIGTEWVVTDTVKGTDYTDQTRLDSKKSPAKKLKEEGNQNKEDQNYIDRYRFNSKLFPKVSRVDKPAAKYIRTRRQQQNNMEGYRFVSKLVPNSRSVKTRPVYQLKWDRLIINELGPEMLLNEVEKSPKALDTTDKNAMLLLRHTTAIPFKMEIKSTIACFACEQKFIDPFLFRDHFIANHQSVDKVLGFCSKVVKTRADITDLSCLLCKQPFDNLDEAAEHLVQMHEIKIDLNEKLGLVPLKFPVRGLCQCAVCGKKVVTFKELYRHSGSHYANHICEVCGMLFETTGALNFHIKVKHNVEGRLPENCVVCVFCCEGFEDCAVFRSHMELEHQAFPVKMAFSHCSEGFVKADCSDIRCRICSEQSDTLEDIAVHLRKVHNKPMQLSDPLGIQPFKPDKLTCVICGAKSFSLRQLSRHTQSHFLRFTCESCGKCYATNTALQVHIKYTHLMKKEQHCCRKCRKMFSSQDERRNHILETKKCWPYLCHMCGERYVSWNAKQVHLKEVHGLEDGPHTCPECGKIFTEKKVCKEHFKITHTDDNYVCPFCGLKFTAKHHYDEHMVGHTKEKPYTCSVCDKSFARKKNLTQHMWIHSEYKRFECKICNKKFNQKVCLVSHNRTNHPELTQFEEQNAGVKYLLSVLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -