Ecen023018.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001207.1:568469-581823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.007 0.55 11.6 0.1 2 23 266 287 266 287 0.96 2 13 0.034 2.6 9.4 0.8 1 21 292 312 292 316 0.90 3 13 0.023 1.8 10.0 2.3 2 23 424 446 423 446 0.95 4 13 0.17 13 7.2 0.2 1 23 452 474 452 474 0.80 5 13 0.025 2 9.8 0.1 1 23 483 506 483 506 0.89 6 13 3.6e-06 0.00028 21.9 5.7 1 23 511 533 511 533 0.98 7 13 8.2e-05 0.0064 17.7 0.9 1 23 539 561 539 561 0.97 8 13 1.4e-05 0.0011 20.1 2.7 1 23 567 589 567 589 0.98 9 13 5.7e-07 4.5e-05 24.4 0.6 1 23 595 617 595 617 0.97 10 13 0.0016 0.12 13.6 3.7 1 23 623 645 623 645 0.98 11 13 0.00094 0.074 14.3 4.4 1 23 697 719 697 719 0.97 12 13 3.1e-06 0.00025 22.1 0.9 1 21 725 745 725 746 0.96 13 13 7.1 5.6e+02 2.1 0.6 11 22 801 812 797 812 0.82
Sequence Information
- Coding Sequence
- ATGGAAGTCGTCTTGTATAATTCGACCGTTTGTAGAATATGTGGAGAGGAAAACGACAATGGAACATTTTTATATTCAACTGAAGAAAATTCTGAAAACATCAGTGATCTAGTAAATGCTTATTTGCCAATCAAGGTATCGGACGACGGGAAACTGCCACGAACCATTTGCCCTGGATGCACCATACAACTTGAAGCTACTGTGGAATTTATAAACTTGATTGTAACTGGCCAGAAAACGATAAGAGCTCTTTATGATAGAGAAAAAGAATACAAGAAAAACATAAGCAATGTCTCATCAAAAGATAATGAAGACTCCATTGTTATTGaagTGGAACCATTCTCAACAAATGGATCTTACAAAGAGGACCACCCTATCGCCCTTAAAGTGGCCGGATTGGACAAGCCGAAGCGCAAGCGAGGCCGGCCTCCCAAGAAGGTCAAATCACCAGAGGAGGAAGCCTTGGAGCTCGCAGCCATCGAGAAGGAGATGGAGCAAGTCAAAGTCAAGCCCAAGGAGGAAGAGCCTACGGGGAAACGGAGACGGAAAACTCCTGAGAGGTTCAGGGAAGTTGTGCagGGCAAAGAACTAGATCAGATATTCCGTGAAGAAGGCATGACGGACGGCGAGGCCAGCGAGGCGGAGGAAAAGATTGAGAAGCCGAAGCCGGTCAAGGTGGCGCTGCAGAAGTCTCCGGAGGTTATCGGTCACACTTCCGTGTCCGGAGAGCTGGTGGCCGTGCTGAAAGGGAAAGGCAGGGGAAGGCCTAAAGGTCGAACGAAACAAACCCGCGAAACCTGCGCCATCTGTGGCCTAGAGTTCTCGAACTCTGGCCGCTACATGTCTCACATCGCGCAGCACGGCCCCGTGCTCTACCAGTGCCAGACCTGCGACCTCAGCTTCTCCATCAGGCTGGATTTCAACTACCATCAGGAGaataCCGGCCATAGCGGTATGGTTGTACTGCCAGGAAAGGAGGAAGAGATTACTGTTGAAACCCAAAGCCCGTCGGAAGATCAACCCCCATCTACGAACCTTCTCCAACCCCCCGCGGAAATATTCGCCACCCCCGAACCTGAGGCGGAGGTTAACACGGTCGCTGGCTCTCTGCCGGACCTCGACCCTCAGCCGGGAGAGAGCTATCTGAAGATCGATGGCATCGTGGAGCTGGAGGATAAAGAACCAGTGCCAAGTGTTGAGAGCTCAGAAGCTAATCCCAGCCCGATTCCCGTTGAGTACGACTCAAAGGATGGGAAGGTGGACAAACTCAAGTGTCCGCACTGCTACAAGCGATATAACAGCAAGCAAGCCAAATCTATGCATATTAGGGCGATGCATAAAGGTGAACGTCCATACGTGTGCGCTCAATGCGGCCAGACGTTCGCGTACCCGCGCGCGCACGCCTTGCACGCGCTGTCTCATCGGAACAACGCCAACTCTAAGGGGTTCGCCTGCGACCTGTGTGGGAAGGTCCTGAACCACCCTTCATCAGTAGCGTACCACAAAGAAGCGGAGCACGCGAACCAACGCTACGTCTGCAACAAGTGCGGGAAGCACTTCAAGCACAAGCAGCTGTTGCAGCGGCACCAGCTCGTGCACACGCAGAACAGACCCTTCTCGTGCAAGGCGTGCAATGCAAAATTCAAGACCAAAGCCAATCTGATCAACCATCAAATGCTGCATACGGGGATAAAGAAATACTCGTGCGAAGAATGCAAGCAACGATTCGCGCACAAGACTAGTCTGACTCTGCATATGCGGTGGCATAGGGGTCAGAAACCCTTCGCCTGCAAGTACTGCGAGAAAGCGTTCACTCAGAAAGGCAACCTGTCGGAACACCTCCGCATCCACACCGGCGAGAAGCCGTTCCAGTGCGCGCTGTGTCCGCGCCGGTTCACCACCTCCTCGCAGCACCGCCTGCATCTGAGGAGGCACGAGCCTAAACCTAACAGGCCACAGCCGAAGCCAAACCAAGAACTAACCGAGACCACGACCACTCTACTGAGTGAGGACGGAAAGCTGATCCACCTCACCATCAACTCTACCGCGCTTCCCACCACCAGCGTTGTGCAGACTGGAAGTGGTGCGCACTCGTGCCCGCACTGCGCCCGCGCCTGCACCACGCGCTGGGCGCTCAACAAGCACCTGCGCCTGCACACCGGGGAGAAGCCCTTCAAGTGCACGCACTGCGAGCGCGCCTTCGCAGACGCCTCCAACCTCAAGAAGCACAAGAGGGCGGCGGGCAGACGCCTCCAACCTCAAGAAGCACAAGAGGGTACGTCACACATGTCTCGTACAGTAGAGAGGAGCACAGGCGGCGGGCAGACGCCTCCAACCTCAAGTAGCACAAGAGGGTACGTCACACATGTCTCGTACAGTAGAGAGGAGCACAGGCGGCGGGCAGACGCCTCCAACCTCAAGAAGCACAAGAGGAGAGGAGCACAGGCGGCGGGCAGACGCCTCCAACCTCAAGTAGCACAAGAGGGTACGTCACACATGTCTCGTACAGTAGAGAGGAGCACAGGCGGCGGGCAGACGCCTCCAACCTCAAGTAGCACAAGAGGGTACGTCACACATGTCTCGTACAGTAGCGAGGAGCACAGGCGGCGGGCAGACGCCTCCAACCTCAAGTAG
- Protein Sequence
- MEVVLYNSTVCRICGEENDNGTFLYSTEENSENISDLVNAYLPIKVSDDGKLPRTICPGCTIQLEATVEFINLIVTGQKTIRALYDREKEYKKNISNVSSKDNEDSIVIEVEPFSTNGSYKEDHPIALKVAGLDKPKRKRGRPPKKVKSPEEEALELAAIEKEMEQVKVKPKEEEPTGKRRRKTPERFREVVQGKELDQIFREEGMTDGEASEAEEKIEKPKPVKVALQKSPEVIGHTSVSGELVAVLKGKGRGRPKGRTKQTRETCAICGLEFSNSGRYMSHIAQHGPVLYQCQTCDLSFSIRLDFNYHQENTGHSGMVVLPGKEEEITVETQSPSEDQPPSTNLLQPPAEIFATPEPEAEVNTVAGSLPDLDPQPGESYLKIDGIVELEDKEPVPSVESSEANPSPIPVEYDSKDGKVDKLKCPHCYKRYNSKQAKSMHIRAMHKGERPYVCAQCGQTFAYPRAHALHALSHRNNANSKGFACDLCGKVLNHPSSVAYHKEAEHANQRYVCNKCGKHFKHKQLLQRHQLVHTQNRPFSCKACNAKFKTKANLINHQMLHTGIKKYSCEECKQRFAHKTSLTLHMRWHRGQKPFACKYCEKAFTQKGNLSEHLRIHTGEKPFQCALCPRRFTTSSQHRLHLRRHEPKPNRPQPKPNQELTETTTTLLSEDGKLIHLTINSTALPTTSVVQTGSGAHSCPHCARACTTRWALNKHLRLHTGEKPFKCTHCERAFADASNLKKHKRAAGRRLQPQEAQEGTSHMSRTVERSTGGGQTPPTSSSTRGYVTHVSYSREEHRRRADASNLKKHKRRGAQAAGRRLQPQVAQEGTSHMSRTVERSTGGGQTPPTSSSTRGYVTHVSYSSEEHRRRADASNLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706316;
- 90% Identity
- -
- 80% Identity
- -