Ecen012043.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:833324-836269[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.017 1.4 10.3 1.7 1 23 67 90 67 90 0.95 2 18 0.069 5.4 8.4 0.0 2 23 117 139 116 139 0.95 3 18 0.0016 0.13 13.6 1.4 2 23 162 183 161 183 0.97 4 18 0.0018 0.14 13.4 0.0 1 23 187 209 187 209 0.97 5 18 0.00045 0.036 15.3 3.5 1 23 214 237 214 237 0.97 6 18 0.0027 0.21 12.9 3.3 1 23 244 267 244 267 0.95 7 18 0.0002 0.016 16.4 6.6 1 23 274 297 274 297 0.98 8 18 0.0035 0.28 12.5 2.0 1 23 302 324 302 324 0.98 9 18 2.4 1.9e+02 3.6 2.5 1 13 330 342 330 343 0.92 10 18 1 79 4.8 0.1 1 23 405 428 405 428 0.91 11 18 0.037 2.9 9.3 0.1 2 23 498 519 497 519 0.96 12 18 0.0044 0.35 12.2 0.6 1 23 523 545 523 545 0.97 13 18 0.0065 0.51 11.7 4.0 1 23 550 573 550 573 0.95 14 18 0.0054 0.42 11.9 1.2 2 23 580 602 579 602 0.92 15 18 2.1e-05 0.0016 19.5 1.6 2 23 610 632 610 632 0.97 16 18 0.00018 0.014 16.6 2.0 1 23 638 660 638 660 0.97 17 18 0.0013 0.099 13.9 0.5 3 23 668 688 666 688 0.98 18 18 0.00058 0.046 15.0 5.0 1 23 694 717 694 717 0.97
Sequence Information
- Coding Sequence
- ATGATAAATCAAGCAACCGTCTTCAAGAAAACAGATAACAAACTCCAAATTAAAGATAGCCTAACTGAAGATTGGGACTCGACTGGCCTTAAAAACAATGCTACGAAATTTGAGCTTGATAAACACCGATTTAATATAAAGACGATATTAGAATACTCAAACGCTACTCCCATTCGAACCCACTACGTTGACAGTGGATTTATCTGTTGTTTCTGCAAGGAAAATTACACCAAAGCGGCTGATCTCAAAACTCATACACTGATCGAACACGACGCTCAAACCAAAAGCGATTTTATGCAAAAGACTTCTCTGTTCCGTTTTACTGTAAAACTGGATATCACCAAACTTCAATGCCTGATTTGTACTATCGCATTGAATGATTTGGATCAACTAATAGATCATCTCAATTATAATCATCAGAAAGGATTGCATACCGATATCAAAAGTCATATAGTATCGTTCAAATTTGATGAGGGTGCTCTAAAATGCCACATCTGCGCTATAGACTTTAATAGTTTCAAGTATTTGCTAGCACATATGAATAAGCATTTCTCTAATTATATCTGCGACGTTTGCGGGGTTGGATTCATCAATCTAAGCCAAGTCATGACACACAGAGATTCGCATACGGATGGCACTCACAAATGCAATAATTGTGAGAAGGTCTTCAAATCAGTAAACAAACTGAAGGCTCACAATCGCTCAACGCACCTTGCAGCTTCTGAGAAGTATAAATGTTTCTACTGCGGCGAAAAGTTCAAAAACAGAAACCTTAAGAAAATTCACACTATAAAGACACACGGGGTTGAATATTCTGATTTTAAATGTAACGCTTGTGATAGGACCTTCAAGAGTGCCAAAAATCTTCACCATCATAAGAGGAAGGACCATTCTATGAAGAGGTATCCTTGTTGTCTCTGTGATAGTGTGTTCTTTAGGCTCGATAGGTTAAAAAGGCATCAGTTGATTCATTCAGGGGTTAAGGCATTTATGTGTGGAGTATGTGCTAAATCTTTTACGACGAAATGTCGCCAGAGACTTAGGACAATCACCATATCTAAGGTTAAACCAGAGCCACGCCAAGAGGGCCCAAGAATCGAACTGGTAAAAATAAAGAGCGTCAATGTTCTGTTCAGAAAACTCCAAGAAAATGTAGAAGAGATACTCAAAAACTCGAATGCAACACTTATAAGACGCGTTAACGGCCTAGATTACATCTGTGCGTACTGTGACTTTGGGGATACTAAACCTGCTGCTCTTAAAAAACACACCCTGGCAACTCACAGCGGTGAAGCCTttgataataaaagaaaatctgCCCACGAACTCCTAGTCAAACTTGATATAACATCTCTGAGCTGCAACATATGTTGCCAAGATATAAACACAGTCGAACAACTGCTTACACATTTACAAAGCGAGCACTCCATAAAAATACACACTGATATCAAAAATCAAATCATACCCTTCAAATTCGGCAAAGGTCCTCTTACTTGCTTCATCTGTAACGTTATCTTCCCTACGTTCAAAGTTCTTCAAGAACATGTTAACGTACACTACCCCAACTACATGTGCCTTGAATGTGGCTCTGGCTTTGTTAACACCAACAGGCTCAAAAAACACCAGCTGAACCATTTAACAGGAAGTTTCAGCTGCACTCATTGCTCCAAAGAGTTCACCACACACGTCGCTGTTAAAAATCACGAGAAACAAGTACACGGGAAGCTGTTGCCTTTAAAATGCTGGCATTGCAATGAGAGGTTCAGCTACAATCAAGCAAAAGAAAAGCATATGGCTGATGTTCATAACGTTGTCTTTCCCCCGGCAAAGTGTGAGACTTGCGATAAGATTTTTCCTCATAGAAGCGCGTTGAGGGCGCATACCAAGAGGGTTCATCTTTTGGATCGTCGCTTCGACTGTCCTGAATGTGATATGAAGTTCCATACGAGCAGGGAGGTCAAAAATCATATGCTAAAGCATACGGGAATCCGGCATTTTGGATGCGAAATCTGTCTTAAGCGGTTTTTGCGAAAGACAGCTTTGACTGAGCATATGAGGATACACAAGAATGAACGGAGATTCAAGTGCGAACATTGCGGGATGACTTTCGTTCAGAAATGCAGCTGGAAAGGACATATGCAGAACAAGCATGGAGATATTGTTTAG
- Protein Sequence
- MINQATVFKKTDNKLQIKDSLTEDWDSTGLKNNATKFELDKHRFNIKTILEYSNATPIRTHYVDSGFICCFCKENYTKAADLKTHTLIEHDAQTKSDFMQKTSLFRFTVKLDITKLQCLICTIALNDLDQLIDHLNYNHQKGLHTDIKSHIVSFKFDEGALKCHICAIDFNSFKYLLAHMNKHFSNYICDVCGVGFINLSQVMTHRDSHTDGTHKCNNCEKVFKSVNKLKAHNRSTHLAASEKYKCFYCGEKFKNRNLKKIHTIKTHGVEYSDFKCNACDRTFKSAKNLHHHKRKDHSMKRYPCCLCDSVFFRLDRLKRHQLIHSGVKAFMCGVCAKSFTTKCRQRLRTITISKVKPEPRQEGPRIELVKIKSVNVLFRKLQENVEEILKNSNATLIRRVNGLDYICAYCDFGDTKPAALKKHTLATHSGEAFDNKRKSAHELLVKLDITSLSCNICCQDINTVEQLLTHLQSEHSIKIHTDIKNQIIPFKFGKGPLTCFICNVIFPTFKVLQEHVNVHYPNYMCLECGSGFVNTNRLKKHQLNHLTGSFSCTHCSKEFTTHVAVKNHEKQVHGKLLPLKCWHCNERFSYNQAKEKHMADVHNVVFPPAKCETCDKIFPHRSALRAHTKRVHLLDRRFDCPECDMKFHTSREVKNHMLKHTGIRHFGCEICLKRFLRKTALTEHMRIHKNERRFKCEHCGMTFVQKCSWKGHMQNKHGDIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -