Ecen011005.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000785.1:651378-652931[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 15 7.0 0.1 2 20 207 225 206 229 0.89 2 10 0.00022 0.017 16.3 1.0 1 23 235 257 235 257 0.98 3 10 0.00093 0.073 14.3 3.5 1 23 263 285 263 285 0.95 4 10 0.00033 0.026 15.7 0.0 2 20 292 310 291 312 0.94 5 10 1.4e-06 0.00011 23.2 1.5 2 23 330 351 329 351 0.96 6 10 6.4e-07 5.1e-05 24.3 2.9 1 23 358 380 358 380 0.98 7 10 0.00011 0.0088 17.2 1.1 1 23 386 408 386 408 0.97 8 10 2.6e-06 0.00021 22.4 2.1 1 23 414 436 414 436 0.97 9 10 5e-05 0.0039 18.3 4.0 1 23 442 464 442 464 0.98 10 10 5.3e-05 0.0042 18.2 4.3 1 23 470 493 470 493 0.97
Sequence Information
- Coding Sequence
- aTGAGTGAAGATGAAGAAACTTATTGCCGGCTCTGTGCTGAGCCCACCAAGAAAGAAAACATGATTTCACCCGACGAAGATGTCGGAATAACGTCGAAATTGACTACCAAAATGCAATGGATAAATGTAGAGATTTCTCCAGACGATACGCTTCCTCTGTCCATCTGCTACTCTTGCTTTGATCTTCTAGAACGTACTTGGAGGTTCCTACACGTAGTCCGCGCCGCACAAGCgaaattaaatcaaatattcGGCAAGAAGGAAGACATTCAAGATCTCTGCGACGAAGTCGCGAAACCAGTGGATAAAGACTGGGAAACCTTCGAGGAAGCCAAGCCTCATGTCAAAATGGAAGACGACCTCCAAGATATCACGGTAGACCCAAACACACTCTTAAATATAGACGTTAATGAGGTCAAAGTCGAAAAAGTCGATATGAGCTTTGATGACGATAGTCAAGGCAGCTTTGGTAACTTCAAATCTAGTGATGAGGATGAGCCTCTGGTCTCAGTCGTGAAAAAACGTAAGAAAAAGTTCAAGTTACTCGATAACACTGTAGCAGACGACTCGAATGCAACACCACCATTTCCTATTGTCTCCTGGAATGACTATCCATGGCGATGTGGTGATTGTGACGCATTATTCGAAAACCTCCAGTCCCTGAGGCTTCATTCTGTCCAAATACACTCCATCTGCTGTAACTTCAAATGCAGCGACTGTGGAAAAACATATCCTATTTATCGTACATTTGTTAAACATGTTCGAGAACACAAAAAGTTGCTTCAATACACTTGTGAGTACTGCAGCAAACGGTTTCAAAGAGACCGGTATCTCAAAAAGCACTATGTTCTTCATAAAGATGACTTATACTTATCCTGTGAAAACTGTGGCTTGGCTTTCGAAACACCAGAGCAACTACAAAACCATATAGTATTATACTCAAAAGGGTATAAAAGAAAACCTTTAAAAAATGAATTAATGGATCTTAAATGCACAATATGTGAGAAGGAGTTTAAAACGAGAAGTAATCTACAGCAGCATAAGTTGGTTCACACGGAACGAAGCCGAGACTTCTCTTGTCACGTCTGCGGGAAAATGTTCTTTACCAAAGGGACATTAAGTACACATATGCGAATACATGAAGACGTTAGACCTTTCAAATGTGCACATTGCTCACTATCGTTCCGAGCTCGAGGAAACTTACAAGCTCATCTTAGTCTTCATTCAGGTTCTAAGCCTTTTGTTTGTGAACATTGTGGGAAAAGCTTTCGGGTTAAACGGCTTCTTAAATCACACTACATAATACATACAGATTTGATGCCATTTGTCTGTCAGTATTGTAATAAAACTTTCAGATTTAAGACAAGACTTAATCTACATTTGCGACAACATACGGGAGCAAAACCCTATCACTGTGTGTATTGTGAACGAGCCTTTACAAATGGGTCGAATTACAAAAAGCATATGAAGAGAAGGCATAATGTTGACACATCACgtaagaaatataatttatcaAATGAAAGTATTCAAGGGCCTGAAATTGAGCAGTTGTGA
- Protein Sequence
- MSEDEETYCRLCAEPTKKENMISPDEDVGITSKLTTKMQWINVEISPDDTLPLSICYSCFDLLERTWRFLHVVRAAQAKLNQIFGKKEDIQDLCDEVAKPVDKDWETFEEAKPHVKMEDDLQDITVDPNTLLNIDVNEVKVEKVDMSFDDDSQGSFGNFKSSDEDEPLVSVVKKRKKKFKLLDNTVADDSNATPPFPIVSWNDYPWRCGDCDALFENLQSLRLHSVQIHSICCNFKCSDCGKTYPIYRTFVKHVREHKKLLQYTCEYCSKRFQRDRYLKKHYVLHKDDLYLSCENCGLAFETPEQLQNHIVLYSKGYKRKPLKNELMDLKCTICEKEFKTRSNLQQHKLVHTERSRDFSCHVCGKMFFTKGTLSTHMRIHEDVRPFKCAHCSLSFRARGNLQAHLSLHSGSKPFVCEHCGKSFRVKRLLKSHYIIHTDLMPFVCQYCNKTFRFKTRLNLHLRQHTGAKPYHCVYCERAFTNGSNYKKHMKRRHNVDTSRKKYNLSNESIQGPEIEQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161608;
- 90% Identity
- iTF_00703282;
- 80% Identity
- -