Ecen012013.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:556854-571822[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00086 0.068 14.4 2.2 1 23 305 327 305 327 0.98 2 24 0.0014 0.11 13.7 1.6 2 23 352 374 351 374 0.96 3 24 0.13 11 7.5 3.5 2 23 397 419 396 419 0.94 4 24 4.1e-05 0.0032 18.6 0.9 1 23 423 445 423 445 0.98 5 24 0.013 1 10.8 2.5 1 23 450 472 450 472 0.96 6 24 0.14 11 7.5 3.5 1 23 479 502 479 502 0.96 7 24 1.4e-05 0.0011 20.0 0.3 1 23 509 532 509 532 0.95 8 24 0.0029 0.23 12.8 2.9 1 23 538 562 538 562 0.96 9 24 0.0041 0.32 12.3 2.6 1 23 567 589 567 589 0.96 10 24 0.044 3.5 9.1 1.6 1 23 641 664 641 664 0.97 11 24 0.12 9.1 7.7 1.4 2 23 687 709 686 709 0.93 12 24 0.0016 0.13 13.6 1.5 2 23 732 754 731 754 0.94 13 24 0.00031 0.024 15.8 0.2 1 23 758 780 758 780 0.96 14 24 0.053 4.1 8.8 0.8 1 23 785 808 785 808 0.96 15 24 2.4 1.9e+02 3.6 0.8 2 21 816 835 816 838 0.83 16 24 2.7 2.1e+02 3.4 0.4 3 23 897 920 895 920 0.85 17 24 0.087 6.9 8.1 0.1 2 23 948 970 947 970 0.92 18 24 0.0021 0.16 13.2 1.5 1 23 989 1011 989 1011 0.98 19 24 0.0034 0.27 12.6 0.5 1 23 1015 1037 1015 1037 0.98 20 24 0.0013 0.099 13.9 1.6 1 23 1042 1065 1042 1065 0.92 21 24 0.0018 0.14 13.4 0.2 2 23 1072 1094 1071 1094 0.95 22 24 0.0027 0.21 12.9 1.0 1 23 1101 1124 1101 1124 0.97 23 24 0.0016 0.13 13.6 2.5 1 23 1128 1150 1128 1150 0.94 24 24 0.002 0.16 13.3 3.5 1 23 1155 1178 1155 1178 0.95
Sequence Information
- Coding Sequence
- ATGGCAGTGGAAAAACTTGAAATAGAGACCTATTTTGGGAAGTGTAAGTGCTGTCTCAAATTTGGTTATCTGAGACATATGTGGGATGAACATGAAGACGAGAATGAAGTCTACGGAAAGATGCTCACTCAATGTTTTTCAATTCCGTGGACTATAGAGAACTCTGAGGAAGATGATCAGATCTGCGAGGATTGCATATGGAAGCTGCGAGAGGCCTATAAGTTCAAACAACAGGTTCTGAAATGTCGCTCTCAGGGGCAAAGTAaagaaGAAAAATTCGTAGAAATCAAATCAGAACCAGAAGAAACGTATGACGTTGAATACCTGGACGAAGATTTGTTGTGCAAGAATGTTGAAAACACAGAGACCAATCAACAGAATGGAGACTATGAAGCGGATTATCTTTTAAATATTGAAACACTTGATGAtggaaatgatgatgatgatcaatcGTTTAAATTtcaagaggatgatgaagatgatgatgatgatgatttagATAAAGACTCAGAGGCGGGCAGATCAGCGGCGAGAAAAAGGTCGCCACGGAAAGGAAATGCTGAAAGTGAGACGGATACACCCAAACCGAAGTGGCCAAAGAAACTGCCTCAGCAAGAACGATGGAAGACTTATAGGCAGTACACAGATGACGACATGAAGCTAGCCATGGATGAGGTGATGAATAAATCCCTGAACCAGAGGCAAGCGGCTCTCAAGTTCAACGTGCCCGCCAAGACGCTGGGCGCCAAAATCAGAGCCATCAAAAATTTGGAGGAGGCAAATCCATCTGACTCGGACGAAACGAAAGGCGACAACGAACCCATGGCGGTTATACAGAAACATAGAGACAATGTTCAATCAGTACTGGCCTACTCCAACGCGACGCCTATACGAGGCTTCTGGGGAATTGGCTACGTATGCTCATTGTGTCCCCACCAAACTTCCAAGCCTTCTGAACTGAAAAAACACACGCAAAAGCATGGAGACATCTCAAAACTCTTCGAGATACATCACGTTCGAGCTCATATCGCTAGACTTGACATTACAGATCTAAAATGCAAACTTTGCAACACGAAATTCGCGAAACTGCAATCTCTAATGCAGCATTTAAAGAGGATACACGGAAAACCTATGCATTTTGATATCGATAACCATATGATTCCGTTTAAATTCGATTCGGATGTTTTACAGTGCGCGGATTGTGATAGCACTTTTCAACACTGCAAGACGTTATCCGAGCACATGGCTAATAAACATTATAGGAACTACGTGTGCAATGAATGCgataaaggtttttttaatcGCGCGCATTTGATTGGACACAGAGAAACTCACCAATCCGGCGAATTCCATTGCTTGGAATGCGGGAAAGTTTTCCCAACTCTTCGGAAGAAGTCTAAACATGAGCGATTACATGTAACTCGCGGTAAAAACTACAAATGCAATTTCTGTGAACTTAGATTCTATAATGTATCACATAAGAATAACCACGAGTTGAGAGTCCATCCAAACGAAAAGCTACAATTCGACTGTTCCTACTGCGACAAATCTTACACTGTGCTAAAAAATCTACGCGCTCATATAAACGAAGTTCATTTAGAGCCCAAAAGACATGAATGTCCTATAAAAACCTGCAAGAAATCCTTCTACTTGAAGCGTACTCTGAAAGCTCATTTAAAATTGCACGATTATAAGCTCTTTGAATGCCCGAGATGTTTTAAGATGTTCAAATCAAGGGTTAACCTGAGATGTCATATACTAGCTCATACGAGTGAGAGAGAGAGGAAATTCAAGTGTGTGGACCCACAGGAAAACGGAAATGAAATGACGCTCAAAGAGCATGTTCTAACGAAACATAGAGAGAATATATTCAGTGTGCTCGCTTACTCCACCGCTACGCCGATAGGGAGCAACTGCGGGTTCGCATGCTGTTTCTGCCCAAAACAGTTCCTAGAAGCGTCCGGATTAAAAAACCACACCCGCACTGAACACAAGAAAGACAAATACGTGATCAAACAAGTCCGATCGCACTGCGTTAAACTAGATATCACTGGATTGATCTGCACGATTTGCCGGAAAGAGATAGAACATCTTGAGTCTTTGATGAAACATTTGAAGTTTAAACACGGGAAGAATATGCATTTTGATATCAAAAACCATATCATACCGTTTAAATTTGATGATAGTGAGCTAAAATGCGTCAAATGCGGACGCGTTTTCGATTTCTTCAAACATCTATCGGAGCATATGAACGATGTTCATTTCAGGAACTACGAATGTGATAAATGTCCAAGAGGATTCGTGAACAAAGCTACGCTTTCAACGCACGCGTTGCAACACGAAACTGGTCATTTCCCCTGCGATTTCTGCCTAAAAGTCTTCAACACTAAAGTCCGAAGATACGAGCACATACGTGTATCCCACAAGCTCAAAAGCAAGGGACGTAAATGCTTTTACTGCGAGGAAAGATTCATAGACTCAGCGAGGAAATCGAAACATGAGATCGAGCGCCATGGCGTAAAGCCAAAAGTTTACGAATGCAAAGCTTGCGGGAAACTGTTTCATATCAAACataaaaaAGAAGTCTACATAACCCGCACAGAGACATCAACTTTCGCGACAGAAATGAAAATCATTCTCCAATACTTCAACGTCACTCCGTTCAGAAACCGAGCggctgtcacaagctgcttttACTGCGTCGAGAAACGTGAGTTCGATTCCCCTCAGGACATGAAGGCACACACCAGAATCACCCATCCAGATCAGCCGGAACTAATAGAGGTAGCACTCCGCCCAGCTTGGTCAAATGAGCTCATCAAGCTAGACATTCAGGACCTAAAATGCAACGTCTGCGATCAAAAAATCTACGACTGGTCGCAAATATTTACGCACCTAGAAGAGATACATGCTACGACTATAAGTACCAAAAATAACATGTTGCCTTTCGATTTGACACCGAATCACCAATGCGTTCTATGCACTGAGAGCTTCATATCGTTCACTCAGCTAGATTGGCATATGAATAGGCACTTTCCGAATTACATATGCGGTCATTGCGGCGATTCATTCGCGAGTCTAGCGAGATTCAGAGCTCATGAGAGAACCCACAAAACTGGTAGATATCCGTGCAAAATATGCCACAAAGTGTTCTCCTTGgaaaaatatatgaataaacACGTCGCATTGAAACATATGAAGGTTGCCAAAATCAAATGTTTCTATTGTCAAGAGGTTTTCGTGACTGAGTATAACAGGCAAGCTCATATAGCGAAAGATCACAGTGAGCATGTCCAAATATACACGTGCGAAGTGTGCGGAGAAACTTTCGACTGGCTGCGGACTTTCACTAGGCATATGACTAGGAGACATAGTACTCAGTTCTACTGTAAAATATGCACGAAGTCGTTCATATCGAGCAAAGCATTGGATCACCATAATACGATACACAACGGTGATAGCTACGAGTGTCCTGTGTGCCAGAGATGTTATTCCTCATTCAATACTTTGAAGAGTCACGTTAAGTTTTCTCATAAGAAACAAGCGAGTAATGTGAAAGGGATATTTGGTATCTAG
- Protein Sequence
- MAVEKLEIETYFGKCKCCLKFGYLRHMWDEHEDENEVYGKMLTQCFSIPWTIENSEEDDQICEDCIWKLREAYKFKQQVLKCRSQGQSKEEKFVEIKSEPEETYDVEYLDEDLLCKNVENTETNQQNGDYEADYLLNIETLDDGNDDDDQSFKFQEDDEDDDDDDLDKDSEAGRSAARKRSPRKGNAESETDTPKPKWPKKLPQQERWKTYRQYTDDDMKLAMDEVMNKSLNQRQAALKFNVPAKTLGAKIRAIKNLEEANPSDSDETKGDNEPMAVIQKHRDNVQSVLAYSNATPIRGFWGIGYVCSLCPHQTSKPSELKKHTQKHGDISKLFEIHHVRAHIARLDITDLKCKLCNTKFAKLQSLMQHLKRIHGKPMHFDIDNHMIPFKFDSDVLQCADCDSTFQHCKTLSEHMANKHYRNYVCNECDKGFFNRAHLIGHRETHQSGEFHCLECGKVFPTLRKKSKHERLHVTRGKNYKCNFCELRFYNVSHKNNHELRVHPNEKLQFDCSYCDKSYTVLKNLRAHINEVHLEPKRHECPIKTCKKSFYLKRTLKAHLKLHDYKLFECPRCFKMFKSRVNLRCHILAHTSERERKFKCVDPQENGNEMTLKEHVLTKHRENIFSVLAYSTATPIGSNCGFACCFCPKQFLEASGLKNHTRTEHKKDKYVIKQVRSHCVKLDITGLICTICRKEIEHLESLMKHLKFKHGKNMHFDIKNHIIPFKFDDSELKCVKCGRVFDFFKHLSEHMNDVHFRNYECDKCPRGFVNKATLSTHALQHETGHFPCDFCLKVFNTKVRRYEHIRVSHKLKSKGRKCFYCEERFIDSARKSKHEIERHGVKPKVYECKACGKLFHIKHKKEVYITRTETSTFATEMKIILQYFNVTPFRNRAAVTSCFYCVEKREFDSPQDMKAHTRITHPDQPELIEVALRPAWSNELIKLDIQDLKCNVCDQKIYDWSQIFTHLEEIHATTISTKNNMLPFDLTPNHQCVLCTESFISFTQLDWHMNRHFPNYICGHCGDSFASLARFRAHERTHKTGRYPCKICHKVFSLEKYMNKHVALKHMKVAKIKCFYCQEVFVTEYNRQAHIAKDHSEHVQIYTCEVCGETFDWLRTFTRHMTRRHSTQFYCKICTKSFISSKALDHHNTIHNGDSYECPVCQRCYSSFNTLKSHVKFSHKKQASNVKGIFGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00697282;
- 90% Identity
- iTF_00697282;
- 80% Identity
- iTF_00697282;