Ecen027069.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001479.1:3247-23258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0091 0.72 11.2 0.1 1 23 414 436 414 436 0.97 2 11 4.6e-05 0.0036 18.4 1.7 1 23 448 470 448 470 0.96 3 11 1.4e-06 0.00011 23.2 2.4 1 23 476 498 476 498 0.99 4 11 3.6e-05 0.0028 18.8 1.6 1 23 505 527 505 527 0.99 5 11 4e-05 0.0032 18.6 0.5 1 23 533 555 533 555 0.96 6 11 6.9e-06 0.00055 21.0 0.2 1 23 561 583 561 583 0.97 7 11 2.5e-05 0.002 19.3 1.9 1 23 589 612 589 612 0.95 8 11 6.6e-06 0.00052 21.1 1.1 1 23 618 641 618 641 0.94 9 11 3.3e-05 0.0026 18.9 2.7 2 23 648 669 647 669 0.97 10 11 3.3e-05 0.0026 18.9 1.1 1 23 675 697 675 697 0.97 11 11 0.018 1.4 10.3 0.0 1 21 703 723 703 727 0.91
Sequence Information
- Coding Sequence
- atggaTCATTTCTCAGCCCTTTTTTACCTTTTTCAGAACACAACATGTGAGAGAAAACTAACGGAAGCAATATGTGAAATGATTGACAAGGAATTAACACAAGAAAGTGTGAACACTACAATACTCTGCAAGGAATGTCTTGATTTGTGTATCAACTATGATATGTACCGGGCtaacatGGCTATAATCAAGACTAAAATATCAGAACAGTTCCATGAAACTTTAAAAAAGAACATAGCCCCTTTGCTCACGCCTAAAAAGGAGATTAAAGGAAGATTTGTGGTGCCGGCATCCAAACTACAGCCTTTGCCTTCGGATTTCCAGCTCAATTTGGGAAAAATAGCGGCTCTCGCTTCTAGTACACAAGCTAAGAATCAAAAACCTCTGCTAAACCTAAAAGTGACGATTGGGAACTCTGTTCTAACGCAGAGCTTAGCGACATCTACTGTCAAAATGATGAAACCAACAGAGCTGTCAATGTCAAAACATGTCAACGTCATCGGCGAGTGGAATGACAGTCTGCCCAGTGAGATATTCTCCagtaatgataatgataatggagataatgataataatgaagATGGTTTGGATATGGAAATTGATGAAGAATGCAATGTGGTGGTACCAGTATCAGAAAACGATCCTATTTTGATAGATGCAAACAATATAAaggaTGAAAACTCTGAAAATCCTCAGTACATAAACGCAGAGAACTTTGAATTGCTATTGGAAGGACAGGACGACGGTCAACCAcaaACAATAGTCCTGGATAGCAACAGTTCGTTTCTACAAATGATGTCATCCGGACAGAAGCTAGTCTACGAGAACGGGGAGATATCACTCGTCATGgacgatgataatgatgatgaagccaATGATGACGAACAAGATTCGAACGACGAAGAGTCTCAGATAGAGCTACAGGTTTCTGGCGATGAAGAAACTGCGAACGCCATCATAGCGGCGGCTCAAGAACAAGGCGGCGCGTTCATAAAAGTAGAAAGCGGCGAGATGTACCGAGTGAAGTCTGTGCAGAGCCATCCCTCAGACAGcgcacagacagacagacaaacaaacACCTCGGAGCTTGTCAGGAGAGAGGGAGAGAGCGCTATGTACACGTGCCTCGTGTGTCCACACGCCTCAGGTCCAATTTCGAAGTCAAAAGAGATAGGCAGTTTCACCGCAAAGGCACAAGAAATGATACAGCACGTTAAATTCGCTCACTCGGCTAAAGCTTACATATGTGCGAAGTGCGGAGTTGTTGTGCGGAATCGAACCGAATACGCATCGCATTTAGCTCGGCACGGCGCGACCATATCCACCAAGCTGCCTCGCTCCCACGACTGCGAGCTTTGCAACAAAAGCTACAACTCGCGCACTTTACTCCAAGAACATATGAACATACATACGGGAAATCGGCCTTACCGCTGCCACGTCTGCGACAAAGCCTTCGCCTCCAAGTACACTATGACGGCGCATTTGAAGACTCATCAGacGCGACCGCGCCCGTTCAAATGCGGCACGTGCGGCAAATCGTTCCTGTCGCAACAGAATCTAAACCAGCATGAGAAAACGCACCTAGGAATCAAGAGCTTTGTCTGCGCAACTTGTGACAAAGCGTTCGCAACTCAGCACAGCCTAGAAAGCCATTACGTGGTACACAGTGGCACAAAGGAGCACGTGTGTGACGTCTGCGAGAAAGCATTCGCACGCAGAGCCGAGCTAAAGGACCACGTTAGAATACATACAGGCGAGCGTCCATTCGCGTGCAACATATGTGACGCCCGCTTCTCCCAGCGCTCGAACCTGCACTCGCACAAGCGAGCCACGCATCTCAACGACAAGCGGCACGCCTGCCCTGACTGTCCCAAGCGGTTCAAACGACGCAGACTCCTCCAATACCACATAAAGGCAGCCCACACGGGCGAGAGGCCTCTATCCTGCGAGGTCTGCCACACTACGTTCGTCTACCCCGAGCACTACAAGAAACACATCCGCATACACAGCGGAGAGCGCCCTTACTACTGCGAGATATGCGGCAAAGCCTTCAACTCTCGCGACAATCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGCGTGCGGCGCCTCCTACATGCGGAAACGGATGCTCGTCGCGCATATGAACGCTAACGGTCATTTAGCAGAATCAATAGTTGTAAACCAGCCAAGAGTTACAAGAGTCACTGAAGGCCTTCAAGGACAGAATAAAACAGAAAATGAAAACAGTAATGATGGAGAAAACGTGATAACCGAGGCGCCGGAGAATTCTCTGATTACAGTCACAGCGGACAACGTGGAACCACATGTTCagatgACAAACGAGAACGGCGGTATTCTGCAGTTCATTCAAGTTAAGATGCCAGATGGTAAAGATGGATGGGTCGCGCTCAATGATTGA
- Protein Sequence
- MDHFSALFYLFQNTTCERKLTEAICEMIDKELTQESVNTTILCKECLDLCINYDMYRANMAIIKTKISEQFHETLKKNIAPLLTPKKEIKGRFVVPASKLQPLPSDFQLNLGKIAALASSTQAKNQKPLLNLKVTIGNSVLTQSLATSTVKMMKPTELSMSKHVNVIGEWNDSLPSEIFSSNDNDNGDNDNNEDGLDMEIDEECNVVVPVSENDPILIDANNIKDENSENPQYINAENFELLLEGQDDGQPQTIVLDSNSSFLQMMSSGQKLVYENGEISLVMDDDNDDEANDDEQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSHPSDSAQTDRQTNTSELVRREGESAMYTCLVCPHASGPISKSKEIGSFTAKAQEMIQHVKFAHSAKAYICAKCGVVVRNRTEYASHLARHGATISTKLPRSHDCELCNKSYNSRTLLQEHMNIHTGNRPYRCHVCDKAFASKYTMTAHLKTHQTRPRPFKCGTCGKSFLSQQNLNQHEKTHLGIKSFVCATCDKAFATQHSLESHYVVHSGTKEHVCDVCEKAFARRAELKDHVRIHTGERPFACNICDARFSQRSNLHSHKRATHLNDKRHACPDCPKRFKRRRLLQYHIKAAHTGERPLSCEVCHTTFVYPEHYKKHIRIHSGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNANGHLAESIVVNQPRVTRVTEGLQGQNKTENENSNDGENVITEAPENSLITVTADNVEPHVQMTNENGGILQFIQVKMPDGKDGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702230;
- 90% Identity
- -
- 80% Identity
- -