Ecen025199.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001323.1:14175-20667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0008 0.063 14.5 6.6 1 23 173 195 173 195 0.98 2 14 5.9e-06 0.00047 21.2 0.6 2 23 199 220 198 220 0.96 3 14 3.1e-05 0.0025 19.0 0.7 1 23 226 248 226 248 0.99 4 14 0.00036 0.028 15.6 0.6 1 23 253 275 253 275 0.97 5 14 0.00023 0.018 16.2 0.2 1 23 281 303 281 303 0.97 6 14 0.00019 0.015 16.5 1.7 1 23 309 332 309 332 0.95 7 14 0.00029 0.023 15.9 0.9 6 23 342 359 340 359 0.96 8 14 0.00061 0.048 14.9 3.2 1 23 362 384 362 384 0.96 9 14 0.021 1.7 10.1 0.2 1 23 390 412 390 412 0.97 10 14 0.025 2 9.8 1.1 3 23 493 513 492 513 0.97 11 14 1.4e-07 1.1e-05 26.4 1.0 1 23 519 541 519 541 0.98 12 14 6.6e-06 0.00052 21.1 0.7 1 23 548 571 548 571 0.96 13 14 0.00043 0.034 15.4 3.6 1 23 576 598 576 598 0.98 14 14 4.9e-05 0.0039 18.3 1.0 1 21 604 624 604 625 0.96
Sequence Information
- Coding Sequence
- ATGAGTGATCCCGCAGTATGCCGGGCCTGCCTCGCTACCGGCCTAAAACTGTACAATATCGAAGATCACACACTTCTTGAACTGTATGAAAAACTCACAAGTTCTCAGTTGATCACAGAGGACTCCCGCCCACAAACTCTCTGCTACATTTGTCTATGGCAGCTCCGGCGCTGCGCTCGTTTCTCGGCCCGCGCGCTGCGCTCAGAGAAGTTCCTCCTGGACCTACTGGCCGATCATGTACAGGTTACTCAAGAAACAGTTTCCACGCTCAACGTAGTCTCACCTCTATCTACAATAACATTAGAATCAGTTTCATATGACAGCTTAACAGACATCGACCCAGCCTTCGAAACAACCATCAAAGAGGTTAAACTAGAGTTAGAAGAGGTAAATATAAGAGAACATGTATTCACTAAAACAGAAAGAGATTCCACAGAAGAAATAAAAGATATACTAgtagaagaaataaaaatacttccAGAAGAAAATGTGAACGTTAAAAAGGAAAATTCACATTACAACTGCGATGAGTGTAGCCTAAAGTTTTCAACGTATAAACATTTTAATAGACACAAAAAAACACATAAAGAATTAATATGCGAGGAATGCGACAAACATTTCACTACAAGTACCGCTTTAAGCGCCCATATGACTATACACACAGGAGAGAAGCCATACACATGCCTTGTATGTAAAAGGGGATTCAGACGAAAACCATTTTTAGTTGATCATATGCGAATACACACAGAAAAACCATACTACTGCAGTAGTTGCAACCTCGGATTTGAAAACCCGGACACATACAGACGACATATGGATttacatgataaagataaacCATATGCTTGCAGTACATGCCCCAAAAAATTCCTATATGCCAGTGCTTTACAGAGACATATAAGTATACACGCAGACGCAAAACCCTACGCTTGCAGCAAATGTGATTTGACTTTCAAAGTACAAAGTGcgtttaataaacattttatgtcGAAACATAATGATGTTAAGCCTTATATATGTTGGTGTAAGAAGGCGTTTCGCTACGCTGTAAGCTTAAGAAGACATATGTTAACGCACTCAAAGCATAGATGTGAAATATGTAATGTCACATTCGATAAGACAAGCAGTTTGAATAAGCATAAAAAAGATCACAAAGAAGGAAGGCCGTACTATTGCGAGAAATGTGATTTAGAATTCAGTATGCTAAGCATTTTCGCTATACACATGGCAAAGCATAGCCAACCGACAGATATACAGAAAAATATAAGTCTAACTAAACAACCCAAATCGGAACATGTCGACATGAATGTACAAGAAGATTTAGATATAACTAAATTACCCAAAACAGAACATAACCCAACAGATAAACACCAAGATGATATAACCGAATTACCCAAACCAAAATACAGAAAACCAATAGATCAAAATAAAATCCAACTACCAAAACCAAGAAGAATATCAAAGAATCGGCCATTTTGTCCTGTTTGTAAGAGACAACAGCATTCACCATCCGGGCTAAAAGAACATATGCGAATACACACCGGAGAGAAACCATATGCTTGTAATATATGTGGAAGAGCATTTCGTACCAATACTTTCTTAAAACTGCATATGCGAACTCACACCGGAGAGAAAGTCCCTTATGCTTGTCATTTGTGTGACAAAGCATATAAACAAAGCGGGCAGTTGAGTGCTCATATAAAGAATTTACACCAAGGTGTAAGGTATTTTTGTGATCTGTGTAACGGTAGGTTCACAGCTAAGCAGCATTTGAAGCGGCATATGAATTCGCATGCGGGCATTAAGCCCTATACATGTGTAAAGTGTAGCCAGAAGTTTTCGACTCCGTCTTCTGTTAAGCGACATATGAAAAATTCTTGTAATTAG
- Protein Sequence
- MSDPAVCRACLATGLKLYNIEDHTLLELYEKLTSSQLITEDSRPQTLCYICLWQLRRCARFSARALRSEKFLLDLLADHVQVTQETVSTLNVVSPLSTITLESVSYDSLTDIDPAFETTIKEVKLELEEVNIREHVFTKTERDSTEEIKDILVEEIKILPEENVNVKKENSHYNCDECSLKFSTYKHFNRHKKTHKELICEECDKHFTTSTALSAHMTIHTGEKPYTCLVCKRGFRRKPFLVDHMRIHTEKPYYCSSCNLGFENPDTYRRHMDLHDKDKPYACSTCPKKFLYASALQRHISIHADAKPYACSKCDLTFKVQSAFNKHFMSKHNDVKPYICWCKKAFRYAVSLRRHMLTHSKHRCEICNVTFDKTSSLNKHKKDHKEGRPYYCEKCDLEFSMLSIFAIHMAKHSQPTDIQKNISLTKQPKSEHVDMNVQEDLDITKLPKTEHNPTDKHQDDITELPKPKYRKPIDQNKIQLPKPRRISKNRPFCPVCKRQQHSPSGLKEHMRIHTGEKPYACNICGRAFRTNTFLKLHMRTHTGEKVPYACHLCDKAYKQSGQLSAHIKNLHQGVRYFCDLCNGRFTAKQHLKRHMNSHAGIKPYTCVKCSQKFSTPSSVKRHMKNSCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -