Ecen011997.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:443903-452506[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.34 27 6.2 2.7 1 21 58 78 58 79 0.96 2 19 5.4 4.2e+02 2.5 0.9 3 23 108 128 107 128 0.92 3 19 0.0068 0.54 11.6 0.3 2 23 151 172 150 172 0.97 4 19 0.0029 0.23 12.8 0.1 1 23 176 198 176 198 0.95 5 19 0.035 2.7 9.4 0.4 1 13 203 215 203 226 0.84 6 19 0.018 1.4 10.3 1.1 1 23 232 255 232 255 0.94 7 19 0.00065 0.051 14.8 1.1 1 23 262 285 262 285 0.98 8 19 0.00074 0.059 14.6 3.3 1 20 292 311 292 314 0.97 9 19 3.7e-06 0.00029 21.9 3.4 1 23 320 342 320 342 0.98 10 19 1e-05 0.0008 20.5 0.4 2 23 346 368 345 368 0.96 11 19 0.093 7.3 8.0 0.0 1 23 387 410 387 410 0.88 12 19 0.00031 0.025 15.8 3.9 1 23 477 499 477 499 0.99 13 19 1.5e-06 0.00012 23.1 0.2 2 23 504 525 503 525 0.97 14 19 4e-05 0.0032 18.6 0.6 1 23 533 556 533 556 0.96 15 19 0.0004 0.031 15.5 8.6 1 23 562 585 562 585 0.96 16 19 0.073 5.8 8.4 0.4 1 23 591 614 591 614 0.95 17 19 0.028 2.2 9.7 3.8 1 20 620 639 620 642 0.95 18 19 1.2e-06 9.5e-05 23.4 1.1 1 23 648 670 648 670 0.96 19 19 0.0042 0.33 12.3 7.4 1 23 676 698 676 699 0.95
Sequence Information
- Coding Sequence
- ATGACCGACGATCCTTTAGTAAAAGTAAAGgataattatgatttaaaaGAGAAACCGAAATCCAAATACCAGAGCAGCGCGAGAAAAAAAGCACTTGTCGCTATAAAGAAGAACGCCTCGTCTATCCTCCAATGCTGGACCTTATTTCCCTTCCGATGGAAAATGAATAAATTCAAATGCGCTTACTGCGAAGACAACTTCACTGAATGCAACACACTCAGGGAGCACATCAGGCATTGTTCCActcaacacaacatcaaggacatttacaataaatttaaGGAGATGCAGCTTATAAACGTCGATACCACTGAAGCCGTTTGCAGCTGCTGCTCCACCCCCTTTACAGACGTCAGACAGATCCGCGAGCACGTCATAAAACACGGTTTCGACTTCGACACCAAACACCCGGACGGCGTCCTCCCATTTAATCTAGACAAAGAATCCTGGAAATGCGTGATATGTGAAGAGAAGTTCAACAATTTCCTTAAACTATACGAGCACATGAACGTTCACTATCAGCATTACATATGTGCTACTTGCGGAAAGGGGTTTATGACTGCTCCTAGATTGCGGAAACATTCAGAAGTCCATATGTCTGGCTCGTTTCCATGCTCGGATTGCGGCAGGGTTTTCACCATGAGAACAGCGAGGAACTTTCACAAGGGGACTGCACACGCCAAAAGCTCAAGATACGTATGCCCCCACTGCTCCATCAGGTTCGATAGCTATAGTCGCAGAATGGCACATTTAAAAGACGAACACAATGAGAAGGAAGTCCTCTACAGATGTGCTCATTGCGAACTCTCTTTCAGCACAAGTGCGAAACGAGCCAGTCACATAAATACCGTCCATTTTCCGTCCCAACGCAACTTTAAATGCACATTATGTGATTGGAATTTTAGAACTGACTTTGACCTGAAGCGACACATGGTTTGTCATTCAGGAGAGAAGAACTTCCACTGCTATGTTTGTGGTAAATCCTTCACAAGAAACAGGTCCTTGTTGATCCATCTCAAAACGCATCAAGATCTTAATTGCAACTGGTGTGGATTGGTGTTTAAGCAGAAGAATCAATTATTGCTTCATTTAAGGACTCTGCACCCGGAATTGATTGATATAAATAGCATTGAAATGAAAATGTGGCATCGAGGCATGTTTGTCTGTGGGATATGTCCACAAAAATTTGCCAATTTTGATCCTGTTAGAGAACATGTCGCTTTAGAGCATCCCAACAAAATTGAGGCACTAAAGCCCATAAAAAAATACTTCCTAAAGTGCGATATAACGGATCTTAAATGTAAGATATGTCTCGCAAGTATAGAAGATATTAACGCTTTTGTTGAGCACTTAAAAGATGGTCACAACAAGCCGCTTATCAACGACTGTGGTATCGGTATCATCCCCTATCTTTTAACCAATGACTTGTACAAATGTACGCACTGCTCTGAAACATTTAACTTCTTCAATTCTCTGAACAGTCATATCAACATTCACTATCCGAATTCAGTATGCCCTATCTGTGGAAAGGCTTTCTCTAATACCGGTAAAATGAACTCCCATATGCAAACTCATGGCATCGGAACCAAGGGAGTATTTAAGTGCTCCAAATGTGACGAGGTTTTTACCAGCCCATACGATAAACAAAAACACGTTTTGTCGGCCCATTCTAAACCGAAGAGGTACAGATGCCCGCATTGCCATGAGAGCTTCAAAAGATACTCTCACAGGTTAAAACACATGAATGAGTTTCACGATACTAAAATTAATTTCCCCTGTACCCTTTGTCCTGCTGTGTTTGCAATGCACAATATGAGGACAAAGCACATCCAACAAGTTCATATCAAGGAGAAGCGATACAGTTGCACTGAATGTTCGCACCAGTTTGTGACAATATCTATGCTTAGAAGACACAAGATTTGTCACACTGGAGAGAGAAAATACCTCTGCAATGTATGCAATAAATCTTACGCGCGTCGTTACACTCTGAAAGAACACATGCGTATACACACTAATGACCGTAGGTTTGCCTGTATGCACTGCAATAGTGCATTTATACAGAAATGTAGCCTTAAGAGTCATATGAAGACGCATCACCCCAACCATGATTTACCGTTTGAAGGCAACCCTTCGCTCAAGCAGGAAGGAGCTTTGACCGGGGCATAG
- Protein Sequence
- MTDDPLVKVKDNYDLKEKPKSKYQSSARKKALVAIKKNASSILQCWTLFPFRWKMNKFKCAYCEDNFTECNTLREHIRHCSTQHNIKDIYNKFKEMQLINVDTTEAVCSCCSTPFTDVRQIREHVIKHGFDFDTKHPDGVLPFNLDKESWKCVICEEKFNNFLKLYEHMNVHYQHYICATCGKGFMTAPRLRKHSEVHMSGSFPCSDCGRVFTMRTARNFHKGTAHAKSSRYVCPHCSIRFDSYSRRMAHLKDEHNEKEVLYRCAHCELSFSTSAKRASHINTVHFPSQRNFKCTLCDWNFRTDFDLKRHMVCHSGEKNFHCYVCGKSFTRNRSLLIHLKTHQDLNCNWCGLVFKQKNQLLLHLRTLHPELIDINSIEMKMWHRGMFVCGICPQKFANFDPVREHVALEHPNKIEALKPIKKYFLKCDITDLKCKICLASIEDINAFVEHLKDGHNKPLINDCGIGIIPYLLTNDLYKCTHCSETFNFFNSLNSHINIHYPNSVCPICGKAFSNTGKMNSHMQTHGIGTKGVFKCSKCDEVFTSPYDKQKHVLSAHSKPKRYRCPHCHESFKRYSHRLKHMNEFHDTKINFPCTLCPAVFAMHNMRTKHIQQVHIKEKRYSCTECSHQFVTISMLRRHKICHTGERKYLCNVCNKSYARRYTLKEHMRIHTNDRRFACMHCNSAFIQKCSLKSHMKTHHPNHDLPFEGNPSLKQEGALTGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -