Ecen014092.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000881.1:44925-71984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00028 0.022 16.0 0.2 2 23 947 968 946 968 0.96 2 12 2.4e-06 0.00019 22.5 1.2 1 23 974 996 974 996 0.98 3 12 4.5e-05 0.0035 18.5 1.0 1 23 1002 1024 1002 1024 0.98 4 12 0.00041 0.032 15.5 4.7 1 23 1030 1052 1030 1052 0.97 5 12 3.6e-06 0.00028 21.9 3.7 1 23 1058 1080 1058 1080 0.99 6 12 8.2e-05 0.0065 17.6 1.9 1 23 1086 1108 1086 1109 0.95 7 12 2.4e-06 0.00019 22.5 0.2 3 23 1117 1137 1115 1137 0.97 8 12 8.3e-07 6.6e-05 23.9 0.8 1 23 1143 1165 1143 1165 0.98 9 12 0.00019 0.015 16.5 2.8 1 23 1171 1193 1171 1193 0.96 10 12 1.5e-05 0.0012 20.0 2.5 1 23 1199 1221 1199 1221 0.98 11 12 7.8e-08 6.1e-06 27.2 3.5 1 23 1227 1249 1227 1249 0.99 12 12 0.017 1.3 10.4 0.2 3 19 1257 1273 1255 1276 0.93
Sequence Information
- Coding Sequence
- ATGTCTTCGGTGTGTAGAGTGTGCCTCGCCGACAATAAAAGactaatgtttttgaaaaacaaGCTCCTTTTAAATGTTTACGAAAAACTATGTGATaacaagTTCAACACTGAGGATGCGAGGCCGAGAGCTTTATGCTGTTTGTGCTACAGGAAGCTGCTGGGATGTCACACTTTCTCCCAGATGGCTCTCAGAGCCGAGACCATCTTTAATCAGCTACTTTATAATGGTCTTGAGgcTACTCATGAAGAAATTACTAAGCTTCACCTCGGAATGGCACATTTGCCTGTGGGCACCACACCGATAACCATGCATCATACAACCACTGTTATTTCTGATGTGGCCTTCAAAGATGAATCAGTATCAGTGAAAGAAGAGATGCCCACAGAAGATCCATTGCTGGAGTTTGAGTTCTGTCCTGAAGATTGTACAGAAGCTGATTTAAAATTAGAAGAAGAAAGCGATGATCGTAGAAATTATCTTAACAGTGATGTGGAAGAAACTAAACCAAATGACTCAAATATGAGTCTCAAATCACAAACAAGTACATCATCACATTTCAAATGTAAAGAAACTGATTATATTGTCAATTTCAACACTGAGGATGCCAGGCCGAGAGCTTTATGCTGTTTGTGCTACCGGAAGCTGCAAAGATGCCACACCTTCTCCCAAATGGCTCACAGATCTGAAAACATTATCAGTCAGCTATTCCTTAAGGGCCTTGAGgtTACTTGTGAAGATATTACTAAGTTAAATCTTGGAGTGGAACAAAACTTGTCAGTTGCGACCGTGCAGTTGACCATGGATGATAGTAACACCAATGCAATCTCTCATTTGAACATTAAAGTTGAACCAATATCGGAAAAGGAAGAGATGGCATCAGAAGAAGATCCATTGGTGGAGTTTGAGTCTGTGTATCCTGAAGATTGTACAAAAtgtgaaattaaatttgaagaAGAAAGTAATGATCATGAAAATTATCCAAATGACGCTGAGCAAACCATGCCCAATCAATCAAATTTGACAGTCATGTCACAGAAAAGAAAATCTCTaccaaaatataaagaaaaagatTATACCTTTAATGTTAATGATACAGAAAAACCGTTACTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCTCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttgttGTTATGTATTCCAGCTTCGCACAGCAGACGGCAAACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATgtcgcaggcagatactagttattgtTATGTATTCCAGCTTCGCACAGCAGACGGCAGACCGGAGACGGTGTGCTTCATATGTCTCTCGCAGCTGCAGCGCTGCCTGCGGCTCGTCCACATGTCGCAGGCAGCGGAGCAGATACTCACGCAGTTCTCTCTCCAGATGCAGGGAAATCATGATACGATCAAGGAGCtaaatttgaaaatggaacaTCCATTATCTATAAGCCCGCTCAAATACACTGTTTTCAGTGATACTTTTGATTACACTGAAACCATTAAGGAAGAATCAATTAAAGGTGGTTCTGAACCAGAAGACGATATAAGTCGGAAGAACGACATTGTAAACATAGAAGTGAAAGAAAGTCCTCAAACGATGCCAACGATGAGCTTGGGTTCTAAGAATGAACTGGCTCTGCATGAGGGGTTTCATCAAAAGGAAGTTTCATGCAATCAATGCTTGGAGCGCTTCCCCGACAAACCAGCCTTGAGGAAACACATGAGAGCTCACTACGCAGAGAAGCCGTACGCCTGCAACAGGTGCGATAAACAATACAACGACAAATCCACACTCTTGAGACATATGAGAATTCACTCCGGAGAGTTGCCGTATCCATGCAACAGTTGCGAAAAACAATTCTATGATAAATCAGCCTTTATAAGGCATACGCGCGTACACACAGGAGAAAAACCATTTGCCTGTGATCTATGTGTTAAGCAGTACAAACACAAATCACATTTAGTAACACACATGAGGAATCATAGCGGGGAAAAGTCATACTCCTGTGACAGATGCGGCCATCAGtttaattataaatcaaatttgATAACGCACATGCGAACTCACAGCGGAGAGGCGCCTTATGCCTGCAGTCAGTGTGGCAAACAGTTCAAACAGCAACAAGTTTTGATTAGTCATACAAGAATCCATCATACTGGAGAAAAACCATATGGTTGCCTGATGTGTGACAAAGAATTTAGTGATAAATCTGCATTAATGAGGCATATTAGAATTCACACTGGTGAAAGGCCATATGCTTGCGATATATGTGATAAGACGTTTAGTCAAAAACCTGCTTTATCAGCCCACCATAGGACTCATAGTGGGGAAAAGCCACATGCGTGCAATATATGTGAAAAACGTTTCAATCTAAAGAAAAGTTTAAAAGTACACTTGAGAAATCACACTGGCGAAAAGCCGTTTGCCTGTGATCATTGCGATAAAAAGTACGTCCTCAAATCATATTTAGTAACGCACATGAGAACACACACGGGAGAAAAGCCATATACTTGCAAACAATGTAATAAAAAGTTCAGTCGACCATCTAATTTTACTACTCATATGCGAATCCACACTGGAGATAAGCCATACGGCTGCACGAGCTGTGCTAAGCGGTTTAGTCAGAAATCTAGTTTGgCAACACATGGTTCCATTAAAATCAACTTGGAGACAAAGGAGCACTTGTCTGTCCCAATGCAGTCTGTCGACTTGGAAGATGAAACACCCAACAGTAGTTCTGCTATACCCATAAAAGAACTTGTATCAGTGAAAGAAGAGGCAACGGTACAAGTTGATGAAATGTTTGAAACTGAGTCTGAAGATACTCATATATCAGAAGAGTGTATCAAAACTCAACTGATATTTGAAGAAGatagtataggtcgcgtcacgtaa
- Protein Sequence
- MSSVCRVCLADNKRLMFLKNKLLLNVYEKLCDNKFNTEDARPRALCCLCYRKLLGCHTFSQMALRAETIFNQLLYNGLEATHEEITKLHLGMAHLPVGTTPITMHHTTTVISDVAFKDESVSVKEEMPTEDPLLEFEFCPEDCTEADLKLEEESDDRRNYLNSDVEETKPNDSNMSLKSQTSTSSHFKCKETDYIVNFNTEDARPRALCCLCYRKLQRCHTFSQMAHRSENIISQLFLKGLEVTCEDITKLNLGVEQNLSVATVQLTMDDSNTNAISHLNIKVEPISEKEEMASEEDPLVEFESVYPEDCTKCEIKFEEESNDHENYPNDAEQTMPNQSNLTVMSQKRKSLPKYKEKDYTFNVNDTEKPLLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLLTADGRPETVCFICLSQLQRCLRLVHMSQADTSCCYVFQLRTADGKPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQADTSYCYVFQLRTADGRPETVCFICLSQLQRCLRLVHMSQAAEQILTQFSLQMQGNHDTIKELNLKMEHPLSISPLKYTVFSDTFDYTETIKEESIKGGSEPEDDISRKNDIVNIEVKESPQTMPTMSLGSKNELALHEGFHQKEVSCNQCLERFPDKPALRKHMRAHYAEKPYACNRCDKQYNDKSTLLRHMRIHSGELPYPCNSCEKQFYDKSAFIRHTRVHTGEKPFACDLCVKQYKHKSHLVTHMRNHSGEKSYSCDRCGHQFNYKSNLITHMRTHSGEAPYACSQCGKQFKQQQVLISHTRIHHTGEKPYGCLMCDKEFSDKSALMRHIRIHTGERPYACDICDKTFSQKPALSAHHRTHSGEKPHACNICEKRFNLKKSLKVHLRNHTGEKPFACDHCDKKYVLKSYLVTHMRTHTGEKPYTCKQCNKKFSRPSNFTTHMRIHTGDKPYGCTSCAKRFSQKSSLATHGSIKINLETKEHLSVPMQSVDLEDETPNSSSAIPIKELVSVKEEATVQVDEMFETESEDTHISEECIKTQLIFEEDSIGRVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -