Ecen024610.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001281.1:442631-450296[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00033 0.026 15.8 4.8 1 23 136 158 136 158 0.98 2 13 3.4e-06 0.00027 22.0 4.3 1 23 162 184 162 184 0.98 3 13 0.0023 0.18 13.1 0.8 2 23 188 209 187 209 0.98 4 13 1.3e-06 0.0001 23.3 0.2 1 23 226 248 226 248 0.98 5 13 2.5e-05 0.002 19.2 0.7 1 23 255 277 255 277 0.98 6 13 3.3e-06 0.00026 22.0 2.7 1 23 283 305 283 305 0.99 7 13 1.6e-05 0.0012 19.9 2.4 2 23 312 333 312 333 0.97 8 13 2.3e-07 1.8e-05 25.7 0.4 1 23 339 361 339 361 0.96 9 13 2.4e-05 0.0019 19.3 3.3 1 23 367 389 367 389 0.96 10 13 0.00033 0.026 15.7 0.5 1 23 395 417 395 417 0.97 11 13 0.16 13 7.3 5.6 3 23 425 445 423 445 0.97 12 13 4.3e-07 3.4e-05 24.8 1.0 1 23 451 473 451 473 0.98 13 13 0.00059 0.047 14.9 1.7 1 20 479 498 479 501 0.94
Sequence Information
- Coding Sequence
- ATGCTCGACTTCAATCTTGCTTGTAGGACGTGCATGAAGAGCAATGTTACCTTGGTGCATCTGTACGACCCAGTGAATGTTGATGAGAACAGCATTATCCAATTGGTTGTGCTACTGTTGGAATGTGCCGCGGTACAAGTGATGAAAGATGATGGGCTGCCTCAAAACCTTTGCGAAGACTGCATCAAGGTGCTCCAACTAACTTATACATTTCGCAGTCAAGCTGTGAGGGCAGAGGAACAGTTCAAAATCCTTCTTCAAGAGAATGTGAAACAGGAAATCAAAGCTGAGGATGACCAGGAGTTTGATTCTTACGAAAACTTCTCTTTTGATACTGAAGACCTGAAACTGGAACCTGATGAAAAtgataacaaacaaataaacaataaaagagACATTAAACCCTTCACCTGCCAAACATGCAACAAAACCTTCACAAAGGAGAAGAAATACCAGAAACACTTACAATTACACACCTCACAATTCAAATGTACATTTTGCaacaaaacttttacaaaaGAAAGCTCTCTACAAAAACATTTGTTGAAACATGACCTTAACAAATGTCAGATATGTTGCGAAACATTTGCTGATGAGTCGGAGTTGTTCCAACATATCGCGACTCATAACATAGCCACCATTAAAGATGAACAAGTCGATCAAATTCCCACATCGTTCCCTTGCGATGAATGTGGGAAGATTTTTACCACTGCTAAATCTCTACTACTACACCAGAAGATACATAAACGAGGAAAACCGACTTATACTTGTGATGTTTGTCAGAAGGAGTTTGTTACAAAAGCCATGGTGAAGCGACATTTGAAACTCCATGGTAAAGACAAGCCGTTCAAATGCACACAATGCTCTCGAAGTTATTCTAGGTCAGATCAGCTGAAAGTTCATTTGAAATCTCACTCGGAGCAGAAGTCTAACGTCTGTTCCTATTGTAATAAAGcattCACCCAAATCTGCAGTTTAAAGGACCATATTAGAACGCACACGGGAGAAACCCCGTACCTTTGCTCGGAGTGCGGCCGAGGCTTCGCTAACAGCTCCAACTTGAGGCAGCACATGCTGAGACATACTGGAGTGAAGCCGCATGCTTGCAAGCTGTGTCCTAAGTCCTTCTGCACTAAAGGTCAGATGACAGCCCACATGGTGACCCACAGCGGCGCGCACCCGCACGAGTGCGCGACGTGCGGCGCCGCATTCACCAAGCTGACGTCACTCAAGAAGCACGCTATGATCCACACGGGCCAGCGTCCGTACGGCTGCGAAACCTGCCTTATGCGATTCACTTGCAAAGACCACTTGAAGCGGCACACCCGCATCCACACGGGAGAGAAGCCCTACCGCTGCCCGCACTGCGAACGAGCATTCACGCAAAGCAACGACCTCGTCAAACATATACGAGGACATCTCGGGGATAATATATACGAATGCTCAGTTTGCCACGTCCGTTTCCGTCTGAAAAGCGAACTGAAAAAGCACTACCCTGTTCATTTCTCCGACGAAGCTTCAAAGAACGATATCAACGCAGCTGTAGAACAGGCGACACAGAACGACGTTCAAACAGACAAACCTAACCAATCTAATGTAGATACATTTAAGATAGATAAACCTGTAGACGACACATATACAATACAAAGTCTAATAGATAAACAAATAGATATTTATACAAAGCCACAAAGTATCATAGATAAACAAACACATGTTTACTCAAAGCCACATAGTCTCATGGAAAAACAAACAGATATTTACTCAAAGCCAGAAAGTCTCATAGATAAAGAAGCACATATTTACTCAAAGCCACATAGCCTCATGGATAAACAAACAGATATTTACTCAAAGCCACAAAGTCTCATAGATAAACAAACAGATATTTACTCCAAGCCACATAGTCTCATGGAAAAACAAACAGATATTTACTCAAAGCCAGAAAGTCTCATAGATAAAGAAGCACATATTTACTCAAAGCCACATAGTCTCATGGATAAACAAACAGATATTTACTCAAAGCCACATAGTCTCATAGATAAACAAACAGATATTTACTCAAAGGTGGAGAATGCAGAGAGTGAAACTATGAACACACAGAATTGTATATTACCAGAGATATTGCCAGAGGGCGTTTCTGTTCAGAAGAAACCAAATAAGTTTATGATTACGGTGAATCAGGATGGAATGATAGCTATTAATATTGCGCCTGAGGGTAGGTGA
- Protein Sequence
- MLDFNLACRTCMKSNVTLVHLYDPVNVDENSIIQLVVLLLECAAVQVMKDDGLPQNLCEDCIKVLQLTYTFRSQAVRAEEQFKILLQENVKQEIKAEDDQEFDSYENFSFDTEDLKLEPDENDNKQINNKRDIKPFTCQTCNKTFTKEKKYQKHLQLHTSQFKCTFCNKTFTKESSLQKHLLKHDLNKCQICCETFADESELFQHIATHNIATIKDEQVDQIPTSFPCDECGKIFTTAKSLLLHQKIHKRGKPTYTCDVCQKEFVTKAMVKRHLKLHGKDKPFKCTQCSRSYSRSDQLKVHLKSHSEQKSNVCSYCNKAFTQICSLKDHIRTHTGETPYLCSECGRGFANSSNLRQHMLRHTGVKPHACKLCPKSFCTKGQMTAHMVTHSGAHPHECATCGAAFTKLTSLKKHAMIHTGQRPYGCETCLMRFTCKDHLKRHTRIHTGEKPYRCPHCERAFTQSNDLVKHIRGHLGDNIYECSVCHVRFRLKSELKKHYPVHFSDEASKNDINAAVEQATQNDVQTDKPNQSNVDTFKIDKPVDDTYTIQSLIDKQIDIYTKPQSIIDKQTHVYSKPHSLMEKQTDIYSKPESLIDKEAHIYSKPHSLMDKQTDIYSKPQSLIDKQTDIYSKPHSLMEKQTDIYSKPESLIDKEAHIYSKPHSLMDKQTDIYSKPHSLIDKQTDIYSKVENAESETMNTQNCILPEILPEGVSVQKKPNKFMITVNQDGMIAINIAPEGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -