Ecen002065.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000070.1:579640-580979[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-10 1.9e-07 31.5 0.0 2 39 29 66 28 69 0.94 2 2 9.7e-14 8e-11 42.3 0.0 1 43 144 186 144 188 0.92
Sequence Information
- Coding Sequence
- ATGTGTGATGGTGTTGTTGTTGTGTGTGTTAAGAACTTTctagaaatagtATTCAAGATAAGACGTAAAAGACGTTTGTGGCCGGAAGAAAGTTTAGCACCGGCAGCGCGCGCCGTTCAATCAGAAGGCATTTCCACGTACACGGCTTCAACCCTCTTCGGAGTCCCTAGGACCGTTCTCCGGCGATATTTAGAAACTGGCAAAGCATGCAATAAATTAGGAAAACGACCAATATTCACTGAAGTACAAGAGAGAGTGCTAGTTATACGCCTTCAAGAACATTTAGAGAAAGGAAAACGTCTTACCTCCAAAGTTATCTGCCAAGAAGCTTTCCGCTTAGCTGAAGAGCTGGATCTTCGCGCTCCATTCAACAAGAAAATGAAACTTGCTGaaatagtACTCAAGATAAGACGTAAAAGGCAACAGTGGTCGGAAGAAAGTTTAGGACTGGCAGTGCGCGCCGTTCAATCAGAAGGAATTTCTATACGCACGGCTTCAATCCTCTTCGGAGTCCCTCGAACCACTCTCCGACGCTATTTAGAAACTGGCAAAACCTCCAAAAAATTAGGAAAACAACCAATCTTCACTGAAGTACAAGAGCGAGTGCTCGTTATACGCCTTCAAGAACATTTAGAGAAAGGAAAACGACTTACCTCCAAAGTTATCTGCCAAGAAGCATTCCGCTTAGCTGAAGAACTGGATCTTCGCGCTCCATTCAACAAGAAAATGAAACTTGCTGGTCTATCATGGTGTCGCAAATTCTTAGTTAGAAATCCTGATTTAaagaaaacgaaataa
- Protein Sequence
- MCDGVVVVCVKNFLEIVFKIRRKRRLWPEESLAPAARAVQSEGISTYTASTLFGVPRTVLRRYLETGKACNKLGKRPIFTEVQERVLVIRLQEHLEKGKRLTSKVICQEAFRLAEELDLRAPFNKKMKLAEIVLKIRRKRQQWSEESLGLAVRAVQSEGISIRTASILFGVPRTTLRRYLETGKTSKKLGKQPIFTEVQERVLVIRLQEHLEKGKRLTSKVICQEAFRLAEELDLRAPFNKKMKLAGLSWCRKFLVRNPDLKKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -