Basic Information

Insect: Eupithecia abbreviata
Gene Symbol: RPH1
Assembly: GCA_943735975.1
Location: CALSER010000221.1:77619-91378[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0019 0.11 13.2 1.3 1 21 395 415 395 418 0.90

2 8 0.035 2.1 9.2 6.2 1 23 423 445 423 445 0.98

3 8 0.018 1 10.2 7.0 1 23 476 499 476 499 0.97

4 8 0.00016 0.0095 16.6 0.2 1 23 503 526 503 526 0.96

5 8 0.016 0.92 10.3 0.1 2 20 541 559 540 561 0.92

6 8 0.0079 0.47 11.3 7.1 1 23 587 610 587 610 0.96

7 8 0.57 34 5.4 2.4 1 23 686 708 686 708 0.83

8 8 0.00022 0.013 16.2 0.1 3 23 716 737 715 737 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0019	0.11	13.2	1.3	1	21	395	415	395	418	0.90
2	8	0.035	2.1	9.2	6.2	1	23	423	445	423	445	0.98
3	8	0.018	1	10.2	7.0	1	23	476	499	476	499	0.97
4	8	0.00016	0.0095	16.6	0.2	1	23	503	526	503	526	0.96
5	8	0.016	0.92	10.3	0.1	2	20	541	559	540	561	0.92
6	8	0.0079	0.47	11.3	7.1	1	23	587	610	587	610	0.96
7	8	0.57	34	5.4	2.4	1	23	686	708	686	708	0.83
8	8	0.00022	0.013	16.2	0.1	3	23	716	737	715	737	0.98

Sequence Information

Coding Sequence: ATGTCTGAATTAAAACTGTGCCGAATATGTTTTAAAAAAGATCTAAAGCTATTCAAATTAGGGCAGTGTAGCTTGAAACAGTACTACGAGGAAATAACTCAGAACCAGGTATTGACTAAAGATGATCTTCCCCAATATTTCTGCTTCGAGTGCGCTGCATTACTTCACAAGTTCCATAAGTTCAAAGAAAAATGTGAATATGGACGGTACACGCTGAAAAAACTGAACTCTAATGGATATATGACCTACCATGTTATCAACGACATTCGCAAGAACCGCACTGATCTCCAACTATCAATAGACTACATCAACAAACTTGGTCAAAAGCGAATCAAAAATGTTACTGTGAAATACAAAACTGAAAAAGAGCCACTTCAAATTGAAAATGTAACTCTAAACTCCTTAGACACTGATGATGATGATGATATACTTAAGTTTGAGTACAGACCAGAACCAGACCATGAAGAATTTAGCTGTAATATCAAATTGGAGGATGAACAAAGTCAAAATGTCATGGAAACAGACTCAGTCTTTACTGATTTGGATAACAAATCATATGCTGTTCCATGCCCCACCATTAAAAGCACACTTGAGACTGAATCTATACTTCCTATTGAATACAACCCTGATCTTACTAAAAACAACACTATTCCTACAAAAACAGAAACAGCAAGTTTGAATATAATCGAAAATAATCCTAAAACCACTATTCACATGAACACACTTTACGAATCGGATGATAATAGATTAAACAACATAGATTCTGACATAGATTTAGAAGCTAAAACAAAGCAAACAAATAAACATTCGAGAAGCCCCAAAAAAAGTAAAAGACCGATTAGAAAATCAACTAGAAACAATAAAACCATATTCGAACCTGAAAATGACTATTCCAATTCAAGTGACGCAAATTTTGAATTAGATCTAGATGTAACACATGAAGAATCAGACAATGAAGATATTACATTGAAAAAAGGTAGAATAACTACTAAAAAAACAGCTAAAACTAAGCTAAAAACACATATAAAAGATAAGGATTCTGATCACAAGTTTGTAGGTATAATCCGTGAACTAAAAGGTGAACTTAGCGTAGGAAATTGGGAAACAAAGTTATTAACAGAGGAAGAAGCCATGGATCAGTTTACGAAGAAGCAATTTGACTCGAGATATGAACGGATGGAGTTTAAATGTACAAAGTGTTTGAAAGGCTTTTCTAAGAATGAAATGCTGCTGAGGCATAATACGTTGTGGCATGATCATGGTGACCACAAGTGCCGTTTCTGCCAAATGCAGTTTAAATGGAAAAGCAAGCTCCAGCTTCACATGAGGAAGCATTATTACATCTACAAGTGCTTACGCTGTGGGCTTGAGTTCTTCGTCAAGACTGGTGCGGTGTTCCACGACGAGCATCACAacggagtgactcacacttgtcggcactgcggcgaggaatacacCCACATATCAACCTACTACACGCACCTCCGCACGTCGCACCGTAACGCCCACGCGTGCACTCTCTGCGGAGAGACCTTCGTGAGCAGCGCCGGCGTCGTCGTACACATGAGGAGGAAACACGTCATGCACGCTGGCAACACTGAGGAGCCATCAACGACCATATACTGCCAGAAATGTAAGATCTCGTTCGTGTCGCAGAGCGCGTACGACACACACTTGGCCGTGTCTGAGTTGCACGAGGAAGAAAATAAGGATATTAAACAACCCAAAAGAAAACGGCGAGAGATCATTGCAAACGCGCACAGATGTCATCATTGCGACAAGAAATTCAACAGCGGTCGACAGGTCCGAACACATATACAACAAGAACACCCCGGGCAGAGAAAGGTGGAGCGCGTTGTATGTGAGATATGCGGGGCTGTCCTGTCGTGCAGTAAGATGTTCAAGGGCGTAGCGGCGAAGTTGGTAAGGGAGCATATGAACAGAGTTCATCCCGGACAGAGGAAGGTGGAGAGAGTTGTCTGTTCCATCTGTGGTGACATGGTCTCGACTACCTATATCCACATCCATATGAACCGACACACCCGGAGTAAGATCTTCCGCTGTGAAACTTGCGGGAAAGAGTTTCTGTGCGCCAACTCACTCTCTACTCACAAAATGTCTCACAGCGGCGAGCGCCCACACGGCTGCCCGATCTGCCCCAAACGGTTCAGTCTGAAGGCTCAGATGGAGGTGCATTACAAGCGGGTGCATCTGAAGGAACCCTACCCTAAGAGGACCTACAATAGGAAGAACAGGAACCGTCAGCCACCGAATGAGATGGAAGTGCCACTCTACGCTTCTCTTCCTAAGTAa
Protein Sequence: MSELKLCRICFKKDLKLFKLGQCSLKQYYEEITQNQVLTKDDLPQYFCFECAALLHKFHKFKEKCEYGRYTLKKLNSNGYMTYHVINDIRKNRTDLQLSIDYINKLGQKRIKNVTVKYKTEKEPLQIENVTLNSLDTDDDDDILKFEYRPEPDHEEFSCNIKLEDEQSQNVMETDSVFTDLDNKSYAVPCPTIKSTLETESILPIEYNPDLTKNNTIPTKTETASLNIIENNPKTTIHMNTLYESDDNRLNNIDSDIDLEAKTKQTNKHSRSPKKSKRPIRKSTRNNKTIFEPENDYSNSSDANFELDLDVTHEESDNEDITLKKGRITTKKTAKTKLKTHIKDKDSDHKFVGIIRELKGELSVGNWETKLLTEEEAMDQFTKKQFDSRYERMEFKCTKCLKGFSKNEMLLRHNTLWHDHGDHKCRFCQMQFKWKSKLQLHMRKHYYIYKCLRCGLEFFVKTGAVFHDEHHNGVTHTCRHCGEEYTHISTYYTHLRTSHRNAHACTLCGETFVSSAGVVVHMRRKHVMHAGNTEEPSTTIYCQKCKISFVSQSAYDTHLAVSELHEEENKDIKQPKRKRREIIANAHRCHHCDKKFNSGRQVRTHIQQEHPGQRKVERVVCEICGAVLSCSKMFKGVAAKLVREHMNRVHPGQRKVERVVCSICGDMVSTTYIHIHMNRHTRSKIFRCETCGKEFLCANSLSTHKMSHSGERPHGCPICPKRFSLKAQMEVHYKRVHLKEPYPKRTYNRKNRNRQPPNEMEVPLYASLPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00702477;
90% Identity: iTF_00698806;
80% Identity: -