Eabb010952.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000086.1:466850-483982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 12 6.8 0.8 1 23 443 465 443 465 0.97 2 10 0.084 5 8.0 0.2 3 23 474 494 472 494 0.93 3 10 1.9 1.1e+02 3.8 0.1 1 14 498 511 498 515 0.82 4 10 8.1e-06 0.00048 20.7 2.4 2 23 525 547 524 547 0.96 5 10 3.8e-06 0.00022 21.7 1.6 1 23 554 576 554 576 0.99 6 10 5.5e-05 0.0032 18.1 2.2 1 23 581 603 581 603 0.98 7 10 0.65 38 5.2 1.8 1 21 609 629 609 634 0.92 8 10 0.095 5.6 7.9 0.6 1 19 639 657 639 662 0.87 9 10 0.00072 0.043 14.5 0.3 3 23 670 690 668 690 0.96 10 10 0.021 1.2 9.9 1.0 3 21 700 718 699 719 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCCTTCCTATGTTTCGTATGCCATAGCACAGTAAATGCTGATACAAATGAGGACACCCGCGATAAATACCGTGAAGTTATTGGAATGCATCTATGCCCCGATTCTCACCTTTGCTTCATTTGCTGCCATTTCCTGAATAAAATGTGGATGTTCAAGTCTATCTGCTTGAAGCGAAGTCTGGAGTATCCGGTGCTGTTCAGCGAGAAAGGCACAATAAACCTACAAAGAAGCGACACCCAAGTTAGCACTCTCTGTCCAGAAGATATATGTCTCCAGCATCTCAACTCAAAGTATCACTTCTACAACACTATAGAAAACTCTCCTCACTTCGAAGAAAACAAATATGTGCAGCTACACGAAGAAATGCACTTTGGACTACTTCCAAACAATGTAGAAGTCCAAACGGATGACTTATTCGAACATCTAAATGACAACCTTCTTAAATCTACAGTGGAACAGTTTAATAATGAATTTCTTGGGATCAAAGAGACTAGAAAAGAAGTTGATGAGTTTATATTTGGAAATGATAACATAGAATCTCCGTTGGAAAATATAAACAAGATAGAGCTAGATAATTTAGAAGAAATATCTGAAGTTAATATAACTTTGACTGATTTAAATGTAAGGAATTTTGATTGCAAGGAATTAGGGCAGGACTATGTTGATAGATCTGAATTAAGAAGCTGTTTTGTTGAAAAACAACAATACATGAGAAATAATCAGTTTGTTGAAAAATGTAATCAAATTGTTGGAACTAGTGATCATATTGTTGGTTTAGTTGACAGATCGCATGATTGTTGTGTTAGAAATAACAGCTTTGTTGAAAAGCTAGATGCAAATAACGTTTTTGTTGATAAACATCAAGATATTGTTCTAAGATCACCAGAAATGGTAAACAATGTTCATTTTGTTGAAAGATCCGATTATGTTTTAAGAAATGATGATTATATTCAAGAAAGAAATCAATATGTAGAAAATGATAATATTATCAATGAATGTCAAAAAGAACCTCATCATAATGATGTAATGAATGACGAAAATGATGAAACAAGTGATAATTATAACACACAGTTAATTAAACCAGAAAATAATGACAACAGAGACTCCAATACATACCTGGATGATGAAAATGAAAAATCAAGTGAAACTGATGAACGAACACATGATAATGAAGAAAAATCATCCGATACTGAAGAAAAAAACAATGAATATATAGAGATATCAAAGAAAAATATATACAACAAATTAACACTCAGTCTAGAAGAACAGAAGATAGAGTTAGAAGAGAGTAGGAGAAGTAAGAAGTATATAGACGCTGTGTATAAATGCTATAGCTGTGCCATAGGCTTTCTATTCAAGGATTCATATCAAGCGCATATGATGAGACATGAAGAGTCCAATGGTGAACACCTCTGCCTGGTATGCTCCCTCCGCTTCGCCAACCCAGCTGTGTTAAGAGTACATCGCGCCAACCACTCGGTAAGGTATCAATGCTCCATCTGTGAGCAGATACTCAGAAGTAAGCAGAGACTCTCCCACCCCTGCCAGAGACAGACCAGCCAGCTGCCCTGCCATCTGTGCGGAAAAGTATTCCCGAGCCAAACACACTATCAGCAGCATCTAAAACGAGCGCACCAGAGCAGCAGTCGAACCTACACCTGTAATGTGTGCGGAAAGCGCTGCACCAACCAAGCCGCCGTTAGGACCCACATGTTAACACACATAACAAGAAAGTTTACGTGCGACCTCTGCCCATCAACATTCAGCAGTCCATACACTCTCAAGCACCACGTCAAATCTCACAGCACGTCGCAACTGCACTACTGCGCCGCTTGCAACGTCGGCTACAGCAGTAGGAAGTGTTTGCAGCAGCATTATAAGAATGCGATAGCACATAAGGATAAAATGTATAAATGCCGACTCTGCGATAAGACCTGCCCCACGTTACTCTCACTCGACGACCACAACGCCGCGGTTCACATGCGCAGTAAAGACCTATTCTGTGCTGTTTGTCCAGCCAGATATTCTACTAGAAAGGGTCTCGTGAGGCACATGAAAAATCACACGAACGTGCCGAAGAAACTGCCGCTGTGCCATTCTTGCGGAGAGAAATTTAAGACTGCCACTATACTTAGAAGACATCTGAAAAATGTATGCGAGAAGAACAAACAAGATCAGCTAATGGTGGCAACACACTATTGA
- Protein Sequence
- MSSFLCFVCHSTVNADTNEDTRDKYREVIGMHLCPDSHLCFICCHFLNKMWMFKSICLKRSLEYPVLFSEKGTINLQRSDTQVSTLCPEDICLQHLNSKYHFYNTIENSPHFEENKYVQLHEEMHFGLLPNNVEVQTDDLFEHLNDNLLKSTVEQFNNEFLGIKETRKEVDEFIFGNDNIESPLENINKIELDNLEEISEVNITLTDLNVRNFDCKELGQDYVDRSELRSCFVEKQQYMRNNQFVEKCNQIVGTSDHIVGLVDRSHDCCVRNNSFVEKLDANNVFVDKHQDIVLRSPEMVNNVHFVERSDYVLRNDDYIQERNQYVENDNIINECQKEPHHNDVMNDENDETSDNYNTQLIKPENNDNRDSNTYLDDENEKSSETDERTHDNEEKSSDTEEKNNEYIEISKKNIYNKLTLSLEEQKIELEESRRSKKYIDAVYKCYSCAIGFLFKDSYQAHMMRHEESNGEHLCLVCSLRFANPAVLRVHRANHSVRYQCSICEQILRSKQRLSHPCQRQTSQLPCHLCGKVFPSQTHYQQHLKRAHQSSSRTYTCNVCGKRCTNQAAVRTHMLTHITRKFTCDLCPSTFSSPYTLKHHVKSHSTSQLHYCAACNVGYSSRKCLQQHYKNAIAHKDKMYKCRLCDKTCPTLLSLDDHNAAVHMRSKDLFCAVCPARYSTRKGLVRHMKNHTNVPKKLPLCHSCGEKFKTATILRRHLKNVCEKNKQDQLMVATHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704421;
- 90% Identity
- iTF_00698677;
- 80% Identity
- -