Eabb000716.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000004.1:2341196-2357979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.16 9.5 7.1 2.8 1 23 270 292 270 292 0.96 2 11 2.1 1.2e+02 3.6 0.4 1 19 296 314 296 316 0.82 3 11 1.5e-05 0.00086 19.9 0.8 1 20 325 344 325 346 0.94 4 11 0.007 0.41 11.4 1.3 2 21 354 373 354 374 0.92 5 11 4.7e-05 0.0028 18.3 0.2 2 23 390 411 389 411 0.94 6 11 0.00024 0.014 16.0 0.2 1 23 416 438 416 438 0.98 7 11 0.00051 0.03 15.0 5.6 1 21 447 467 447 472 0.94 8 11 0.0011 0.065 14.0 1.8 1 23 480 503 480 503 0.89 9 11 0.013 0.77 10.6 0.2 1 23 509 532 509 532 0.88 10 11 0.0072 0.43 11.4 0.4 3 19 545 561 543 562 0.92 11 11 0.04 2.4 9.0 0.9 1 23 575 598 575 598 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAATCAACATTAATATCGAGGGCTACAATGTGAACGGTGTGTGTGTCGGATGTTTGAATTATAATCGTAAAATGTATTACGACGACGAAGTGAAAGAATGTTTCAAAACAATCGGAAATATCGATGTCCCCGATGGCCTCTCTATCCAGGTGTGCTGGGAATGTCTGGCCGCAGTCAGAAGAATCTCATCCTTCCAAACACAAATATTGGCCGCCTATGATGTACTAATTAATTATTCTAGACAGCACACATTCCTGAACTCCCCTAAAGACCTGACCATCTACGCATCCACTCATCTCAGCACGTCGCCCGTGACGTGGACCGACTGGACAGAAACACAAGCAGTAGACGAGGATGTTGAAATAGATGTGGATGTGAAAGTGGAGACCAAGAATGAACCGGCCGCAGAGGATGGTTatgaagaaggcaGTGTTAAAGAAGAGGATCCGGATTTATCTAACTGCTGGGAGGTGGGTCTGGATCCTGAATCATCAGACGAGGATGTGCAGCTGTCACAGATCAAGGACAAGAAGCAGAAAGAGAAGAGGGGAAGGAAGAAAAAGAAACATAAGACAAAACCGCCAGAACGAGTGACCCGCAAACTGAAGAACCTACCCGATGTGGTGGAACTTCACACAATGACTGAAGACGAGATGTGGATAGTTCGCATGGAGGACGTTGACAGCGAGTGTTTCCAACGCATGCGGCACAAGTGCACGGACTGCATTATAGGGTTCAACACGGAGCGGTTGAAAGAGGCGCATGATAGCGGGAAACATCGACCAAAAACCGGCGGGGCCCACCAATGCGACGTTTGCAAAGCGTACTTCCTAACCAGAGACAATCTGGCAGTGCATCGCTCGCACCACCTAGCGGCGTACAGATGTCGCGTCTGCGGTTTAGTGACTACCCTCAAGCGGGGTATTTCCCAGCACGCGTGCGCTCAAAGCATCGTCAAGGAAGAGTTTCCCTGCACCTACTGTGATAAAGTCTTCAGCTCTAAATCCAAGCTGTCGTACCACCGCTCTGCGTCTTGCCGCGCGGAGCGGCCGCAGTGCGACTGTTGCGGCAAAGTCTTCGCGAACAAGATGACCCTTAAGTACCATCTCAAATTACTCCCGCTGAAGAAAGAAGACAAGCCTAAAGAGAAGCTGTACATACCATGCAAAGGATGCAACAAGGTGTTCAATTCTAAGAAGAGTTACAGAGCGCATGTTGTAATCCACGAGGGTCATTCCTACCCTTGTCCTATCTGCGGCAAGCTGTTTATGTGGAAGCGGAACCTGTCTCGACACACGCGGGCTCACAAGGACAGAGACGCGGGCGCCACGCATCAGTGTCGCGAATGCAACAAGACATTTGCGTCGCGCGACTGCTACAACAACCACATGCGGCTCAGCAAGCGGCATGCCAGCGAATCTACTTACGTGCATGAATGCAACTACTGTGGTAAGAAGTTCCCGACTAAATGGTGTATGGTGGACCACGTGGACTGGGAACATTTGAAGCGCATCAAGTACCAGTGCAGCGTCTGCTTCAAGGCGTTCAAAACAGCGAAGATAATGGTAGCTCACGTGAACAACATCCACGGCGGACGGAAGCGGGAACCGGACGGCGAACATCTGTGTGAAGTCTGCGGGAAGTCTTACAAGTCCGTAAAACGTCTAAAAGCCCACGTGTGGGCGATGCACACGCAGCGGTCCTCGGTCAAAAGCTACAAGTGCACGCTGTGCGCAGCATCCTTCACCTGGCAGACTTCTATCTACAAGCATATGAAGATGATGCATAACAACAAACGGACCAACAAGGTGACCCGCGCGCCGTCAGTCAAGAAACAAGACCCGTACGCCGACCTGCAGAATTTCATACATACGCTACAGCCGATCCCGCCTCTACACGCATCACAGAACCTAGTCTAA
- Protein Sequence
- MKEININIEGYNVNGVCVGCLNYNRKMYYDDEVKECFKTIGNIDVPDGLSIQVCWECLAAVRRISSFQTQILAAYDVLINYSRQHTFLNSPKDLTIYASTHLSTSPVTWTDWTETQAVDEDVEIDVDVKVETKNEPAAEDGYEEGSVKEEDPDLSNCWEVGLDPESSDEDVQLSQIKDKKQKEKRGRKKKKHKTKPPERVTRKLKNLPDVVELHTMTEDEMWIVRMEDVDSECFQRMRHKCTDCIIGFNTERLKEAHDSGKHRPKTGGAHQCDVCKAYFLTRDNLAVHRSHHLAAYRCRVCGLVTTLKRGISQHACAQSIVKEEFPCTYCDKVFSSKSKLSYHRSASCRAERPQCDCCGKVFANKMTLKYHLKLLPLKKEDKPKEKLYIPCKGCNKVFNSKKSYRAHVVIHEGHSYPCPICGKLFMWKRNLSRHTRAHKDRDAGATHQCRECNKTFASRDCYNNHMRLSKRHASESTYVHECNYCGKKFPTKWCMVDHVDWEHLKRIKYQCSVCFKAFKTAKIMVAHVNNIHGGRKREPDGEHLCEVCGKSYKSVKRLKAHVWAMHTQRSSVKSYKCTLCAASFTWQTSIYKHMKMMHNNKRTNKVTRAPSVKKQDPYADLQNFIHTLQPIPPLHASQNLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00705400;
- 90% Identity
- iTF_00703344;
- 80% Identity
- -