Basic Information

Insect: Eupithecia abbreviata
Gene Symbol: -
Assembly: GCA_943735975.1
Location: CALSER010000013.1:874791-879634[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.87 51 4.8 0.1 3 23 190 211 188 211 0.94

2 9 0.041 2.4 9.0 3.1 2 23 247 268 247 268 0.97

3 9 0.49 29 5.6 0.0 2 20 275 293 274 295 0.92

4 9 1.5e-05 0.0009 19.8 0.6 2 23 319 340 318 340 0.96

5 9 7.5e-07 4.4e-05 23.9 1.1 1 23 348 370 348 370 0.98

6 9 0.0021 0.12 13.1 1.5 1 23 376 398 376 398 0.97

7 9 1.9e-05 0.0011 19.5 2.3 1 23 404 426 404 426 0.97

8 9 0.0023 0.14 12.9 3.1 1 23 432 454 432 454 0.98

9 9 3.1e-06 0.00018 22.0 6.5 1 23 460 483 460 483 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.87	51	4.8	0.1	3	23	190	211	188	211	0.94
2	9	0.041	2.4	9.0	3.1	2	23	247	268	247	268	0.97
3	9	0.49	29	5.6	0.0	2	20	275	293	274	295	0.92
4	9	1.5e-05	0.0009	19.8	0.6	2	23	319	340	318	340	0.96
5	9	7.5e-07	4.4e-05	23.9	1.1	1	23	348	370	348	370	0.98
6	9	0.0021	0.12	13.1	1.5	1	23	376	398	376	398	0.97
7	9	1.9e-05	0.0011	19.5	2.3	1	23	404	426	404	426	0.97
8	9	0.0023	0.14	12.9	3.1	1	23	432	454	432	454	0.98
9	9	3.1e-06	0.00018	22.0	6.5	1	23	460	483	460	483	0.97

Sequence Information

Coding Sequence: ATGAATTCCACCGAAAACCTTTACTGCCGCTTTTGCGCAGAGCCCAGAAGTACCGAGAAATTGCTAAACTTGCAAACAGATTCGAAAAAACAAGATGAAATCGTTTCAAAGTTGACTCTACTCAACGCGATATTCGTAGACATAACAAACCGTGATTCCCTACCGAAAACAATTTGTTTCGTGTGCTACGACTCTCTAAACAAAGCTTACGAGTTCTTCGAAGGCGTGAAACGTGCCCAACATGTCCTATCCTCGCTATTTACCACCGAAAACAACAAATACCTATCGGATGACGATGCTTACGAAGATTTCCTATCACCAGAAGTTGTTGAAGACATCACGGTCAAAGTTGAGCTGGAAAAGAACACAGAGCCTTCTAATTTACAGGTTAAACAAGAGCCAAAAGAAGAGAAAGAGTCCGAAGAGTTTACAAACTCCTTGAATGTGGATGATCTGATTGGTGCAGCACTGCTAAACTCTTTCCCGTCGAATCTGACTATCTATGCGAAGGAAGTGAGTGATGTTGGGAAGAGAGATGTGGTGTCTTGGGCGGACTACCCCTGGTTTTGTGCACTGTGCAGTATTGAGTTTATGGGGTTGGATATGCTGAGATCTCACACAGAGATGGTCCACGGCAAGTGCGCAGCGTTCTACTGTGTGGACTGCAAGCAAGCGAGGAAGGAGGAGTTCAGCATGTTCATCAAGCATGTCCGGAAGCATCGCAAATGTCTGAGAAACTACTGCCACTACTGCAATATCCACATGGAAAGCACATCCGAACTGAAGGCCCACATCAAGCAACACTCCATCAAGCCATCAGTCCCGTGCCATCTCTGTGGAGCCATACAAACAGACCCTGAACAACTCCAAATGCACCTTCTACAATTCAGCACGATCAAGGCCAAAAGACGACCCAGAAGAAAACCCGGCACACCGATCACCGTTGAAGAACTTACCTGTGGACTATGCAAGAAGGTGTACAAAAACCCTAACAGCTTAAGAGACCATATGAAACTACATCTAATAGATAGAAAGAGAGACTACACTTGTGAACGGTGCGGCAAGATGTTTTATAATAAAGGAACGTTAACGTCCCATATCATGTCGCATGATAAAGTACGTCCACATGTCTGTAGGATTTGCAACAAGTCCTTTCTATTCCCTAATATGTTGCGACGCCATGTTGAAATGCATTCGGGTGTTAAACCGTTCTCTTGTGAGACTTGCGGCCGTTGTTTTAGACTTCAATATCAATTAAACGCGCATAAAATAGTACATACGGATTCCATGCCATACACTTGCCAATACTGTAGTAAAGCGTTCCGTTTCAAGCAGATTTTGAAGAATCATGAACGACAACACACCGGCGCGAAACCATACTGCTGCCAACATTGCGGTATGGAGTTCACGAACTGGTCTAATTATAATAAACATATGAAGAGGCGGCATGGCACTGATACGTCGAAGAAAAAGATAACCCCACAAGGTGTTTTCCCGATTAATCCTGAGACGGGACAGATTATTGAGTTAGTTGATCCTGTGGGAACGGCAGAGTGGAAGAGTAGGATTATGGTTCCAGGGAAGAGGGGGAAAAAGAAGGTTATTAAAGAGGAGAGTTTAGTTTAA
Protein Sequence: MNSTENLYCRFCAEPRSTEKLLNLQTDSKKQDEIVSKLTLLNAIFVDITNRDSLPKTICFVCYDSLNKAYEFFEGVKRAQHVLSSLFTTENNKYLSDDDAYEDFLSPEVVEDITVKVELEKNTEPSNLQVKQEPKEEKESEEFTNSLNVDDLIGAALLNSFPSNLTIYAKEVSDVGKRDVVSWADYPWFCALCSIEFMGLDMLRSHTEMVHGKCAAFYCVDCKQARKEEFSMFIKHVRKHRKCLRNYCHYCNIHMESTSELKAHIKQHSIKPSVPCHLCGAIQTDPEQLQMHLLQFSTIKAKRRPRRKPGTPITVEELTCGLCKKVYKNPNSLRDHMKLHLIDRKRDYTCERCGKMFYNKGTLTSHIMSHDKVRPHVCRICNKSFLFPNMLRRHVEMHSGVKPFSCETCGRCFRLQYQLNAHKIVHTDSMPYTCQYCSKAFRFKQILKNHERQHTGAKPYCCQHCGMEFTNWSNYNKHMKRRHGTDTSKKKITPQGVFPINPETGQIIELVDPVGTAEWKSRIMVPGKRGKKKVIKEESLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00700460;
90% Identity: iTF_00700460;
80% Identity: iTF_00698621;