Eabb000556.2
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000004.1:460009-476839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6 94 4.0 2.4 1 23 190 213 190 213 0.92 2 12 1.1 63 4.6 2.1 2 23 246 268 245 268 0.87 3 12 0.024 1.4 9.8 4.9 1 23 278 300 278 300 0.98 4 12 0.00016 0.0095 16.6 0.3 2 23 305 327 304 327 0.95 5 12 1.5e-05 0.00086 19.9 1.5 1 23 334 357 334 357 0.97 6 12 0.013 0.79 10.5 6.6 3 23 364 384 363 384 0.97 7 12 0.082 4.9 8.1 6.2 3 23 413 433 412 433 0.97 8 12 0.013 0.79 10.5 6.6 3 23 462 482 461 482 0.97 9 12 4.5e-05 0.0027 18.3 0.2 1 23 493 516 493 516 0.94 10 12 1.5e-05 0.00088 19.8 2.9 1 23 522 545 522 545 0.95 11 12 0.00032 0.019 15.7 0.1 3 23 556 576 555 576 0.98 12 12 0.00019 0.011 16.4 0.1 2 23 583 605 582 605 0.95
Sequence Information
- Coding Sequence
- ATGAATGGCGACAAGATTTGTTGCTGCTGTTTATCAAAGAATAATAGAATGGTCGGCCTCCAAAATTGCAAACATACAGATTTTTTACAATACTTTCCACAGATAGATCTGTCACAGTCCACCGTGTGCCTGTCCTGCCACAGTATGCTGGAAAAAATAAAGAAATTTCGAAAACAAATCATTCATAGCACCAAAGTTTTACAAAATCAGCTACCCTACAATTTACCAACAAAGTTGCATAAACTACATACAACCGACATAAAAACCACTTCTACATCTGATTTTGAAGACGAAGCGAACACAGAGGAAGTAAACATCAAAATAGAGCAACAACCGACCACGAGTTCTTTAGCCTTCGAGACAGAAATAAAAATTGAACATAATACAAGTTCAGACAGTGAAAACGATACACCGGAAGACTTCAATGATGGTAAGAAAAGAAGATGCCTACAGTCTCAAGATGACGCTAAATACAAAGGGAAGATAGCGATATACAATTTAACAAGAGATGAATTAGAGGAAGAAAGAGAAATGGAGATGAAGAAAGCGACTTATCTAAAACTTCCCTTCAAATGTAAAAGTTGTATCAAAGGATTTGATCATGAGATAACTTTATTGAAACACAATGATAAGCAACATCGACAGAAAAAAGGTGGAATACAATGTGACATCTGCAAAACTATTCTGGCGCCACTTTCATACAAGGAGCACAAACGAAGACATTACAGAAGGCTTCAGTGTGAGGTCTGCGGGAAGCGTTCGCATGACATCTACTCCATCTCCCACCACTTCAACCAGGAACACAGCGAGGCGGGGCACATTCCTCACCAGTTCCAATGCACCGACTGCGAGTTCAGCTGTAGTTCCAACCGCGCCTACCGCTACCACCGCGACAAACACAAGCAGAAATCACAATGCACCAAGTGTGGCAACACTTACGTCAACGCGACTACGCTACGAGTCCATATGCTAAACGTGCACGACCAAACAACAGGCAAATACAAATGCTTACAATGCGACAAGTCGTACTCCAGTAAGTCGGGTCTCTTCAGCCACCGGTCGTCAGCGCACTCGGACACCGGCGCGTACTGCGTGGACTGCAAGACTCACTTCCGCACCCGGCATGGACTTGCGCATCACCTCAGCACTCATTCCAAACATGTCGATGGCAGCAACAAAAGTAAGTCGGGTCTCTTCAGCCACCGTTCGTCAGCGCACTCGGACACCGGCGCGTACTGCGTGGACTGCAAGACTCACTTCCAGACCCGGCATGGACTTGCGCATCATCTCAGCACTCATTCCAAACATGTCGATGGCAGCAACAAAAGTGAGTCGGGTCTCTTCAGCCACCGTTCGTCAGCGCACTCGGACACCGGCGCGTACTGCGTGGACTGCAAGACTCACTTCCGCACCCGGCATGGACTTGCGCATCACCTCAGCACTCATTCCAAACATGTCGATGGCAGCAACAAAAGATTTCAGTGTGCTGACTGCGACGCCAAGTTCATGAGGAAATCCTCACTCCAAGAGCACATCGACTGGACACATCTAAAGAACGTCGTCCATCAGTGCAGTCAATGTGATAAGGTGTTCAAAAGTGTAAAGTCTCTTAAGAAGCACATTAGCTACGTGCACGAGAAGAAGCGGCCTCCGCGAGACAAGATCTGCGACTATTGTGGCAGAGGGTTCACGACTATCCCAATCCTTCGCAACCACATCCGCACACATACAGGCGAGCGCCCGCTGACCTGCCCGCAATGCGACGCGACCTTCGCACAGTCTGCGTCTCTGTATACACACACCAAACTAGTTCACAAGCACTCTACAGCTAAGCACTAG
- Protein Sequence
- MNGDKICCCCLSKNNRMVGLQNCKHTDFLQYFPQIDLSQSTVCLSCHSMLEKIKKFRKQIIHSTKVLQNQLPYNLPTKLHKLHTTDIKTTSTSDFEDEANTEEVNIKIEQQPTTSSLAFETEIKIEHNTSSDSENDTPEDFNDGKKRRCLQSQDDAKYKGKIAIYNLTRDELEEEREMEMKKATYLKLPFKCKSCIKGFDHEITLLKHNDKQHRQKKGGIQCDICKTILAPLSYKEHKRRHYRRLQCEVCGKRSHDIYSISHHFNQEHSEAGHIPHQFQCTDCEFSCSSNRAYRYHRDKHKQKSQCTKCGNTYVNATTLRVHMLNVHDQTTGKYKCLQCDKSYSSKSGLFSHRSSAHSDTGAYCVDCKTHFRTRHGLAHHLSTHSKHVDGSNKSKSGLFSHRSSAHSDTGAYCVDCKTHFQTRHGLAHHLSTHSKHVDGSNKSESGLFSHRSSAHSDTGAYCVDCKTHFRTRHGLAHHLSTHSKHVDGSNKRFQCADCDAKFMRKSSLQEHIDWTHLKNVVHQCSQCDKVFKSVKSLKKHISYVHEKKRPPRDKICDYCGRGFTTIPILRNHIRTHTGERPLTCPQCDATFAQSASLYTHTKLVHKHSTAKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698592;
- 90% Identity
- -
- 80% Identity
- -