Eabb000530.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000004.1:24347-60284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.41 24 5.9 1.5 1 23 220 243 220 243 0.90 2 30 0.064 3.8 8.4 0.7 1 23 276 299 276 299 0.96 3 30 0.068 4 8.3 0.5 2 21 312 331 311 336 0.92 4 30 0.0083 0.49 11.2 0.0 3 23 346 367 344 367 0.95 5 30 0.05 3 8.7 0.3 2 23 387 409 386 409 0.94 6 30 0.54 32 5.5 0.3 3 14 427 438 425 442 0.79 7 30 4.9 2.9e+02 2.5 0.3 3 14 513 524 511 528 0.79 8 30 4.9 2.9e+02 2.5 0.3 3 14 556 567 554 571 0.79 9 30 4.7 2.8e+02 2.5 0.4 3 15 599 611 597 614 0.79 10 30 4.9 2.9e+02 2.5 0.3 3 14 642 653 640 657 0.79 11 30 4.9 2.9e+02 2.5 0.3 3 14 685 696 683 700 0.79 12 30 4.7 2.8e+02 2.5 0.4 3 15 728 740 726 743 0.79 13 30 0.54 32 5.5 0.3 3 14 771 782 769 786 0.79 14 30 0.54 32 5.5 0.3 3 14 814 825 812 829 0.79 15 30 4.7 2.8e+02 2.5 0.4 3 15 857 869 855 872 0.79 16 30 0.0034 0.2 12.4 1.2 3 23 900 920 898 920 0.89 17 30 0.006 0.36 11.6 2.6 1 23 926 948 926 948 0.92 18 30 2.3e-06 0.00014 22.4 1.3 2 23 954 976 954 976 0.96 19 30 0.0051 0.3 11.9 0.7 1 23 1248 1270 1248 1270 0.98 20 30 0.0057 0.34 11.7 0.5 2 23 1278 1300 1277 1300 0.94 21 30 0.0026 0.15 12.8 0.2 1 23 1331 1354 1331 1354 0.95 22 30 2.8 1.6e+02 3.2 1.0 1 21 1358 1378 1358 1381 0.80 23 30 0.17 10 7.1 0.1 2 23 1393 1415 1392 1415 0.94 24 30 0.0043 0.25 12.1 2.9 1 20 1421 1440 1421 1445 0.94 25 30 9.7e-05 0.0057 17.3 1.2 3 23 1472 1493 1471 1493 0.96 26 30 0.62 36 5.3 0.3 2 23 1500 1523 1499 1523 0.89 27 30 0.003 0.18 12.6 3.1 3 23 1589 1609 1587 1609 0.96 28 30 0.01 0.61 10.9 1.0 1 23 1615 1637 1615 1637 0.96 29 30 6.8e-05 0.004 17.8 1.6 2 23 1643 1664 1643 1664 0.98 30 30 0.06 3.6 8.5 0.4 1 20 1670 1689 1670 1691 0.93
Sequence Information
- Coding Sequence
- ATGGCTGTTTATAAAATATGTCGTGTGTGTTTACGAACTGACTTCGAATTACGAAACCTGGATGGTCCAGTTTTGGAGTTATTCCAGAAAATTTGCGGGAAAACTAATAAACCAGCATTGTCCGATCTGCATAAAAGCATTCCTCTGAGTTCCTATGGCATATTCACGCAAGATTTAAAAGTTATTAATATATTCCAAGAAACAGAAGACAATGATGTCACCGTTAAAGTAGAGAAATTCGAAGATGTTCATAGTGATGCATACACAAATGACAATGATCAAATAGATAATGATTTAAATGATGATGACACTGATGATGATAATAAGTATCTGATAAACTTTGTTAAGGTTAAAGATAAGAAAGGTGTGAAAACTAAGAAGAAAAAGAGTGAAATCCAAAGCCTTAATAAATCAGATGAAACAAATCCAAAGAAGGAAAAGCATCGAAAGCCCCTAAAAGACCTTCAGGAATACGAAAGCGTGTTCGACATTCAACTCTTCAGAACGGATGCTGAGATCCAGCGCGAGTTTGCCGCTAGGAAGACTTCTCCGAGATATCTGGATGCGCCACACAAATGTGACATCTGCTACACCGTGTATAAGTGTCAGAAGCTGGCTGATTTCCATATGAAGTGGCATCTTCCTTCAGCGGGGGACTTCCCTTGCGACTTTTGTGCTATGCGTTTCAAGACCCACCCCGCGATGCGCAAACACAAGACTGATGTGCATTTCGGAAGGTTTGCTTGCAAGAAGTGTCCTCTCATCACGTATCACAACCACAGTTCGACCTATATGTCTCACCTCCGCAAGTCCCACCGCACTGAGCATGTGTGCGTGACCTGCGCGCAGACCTTCGTGTCTGAAAAAGGACTCTCGGTGCATCGGAAGAAGGTCCATAATGCTTCTAGCAAGGTGGATGCTACCGGCACGACGCGCTGCTCGCAGTGCGACCTCACCTTCGCGAACCAGCAAGTCTACACGGTGCATCTCATGAACACCGACAAACATAAGGACAAAGCTGAGGCGATTATAGCGTGCCCGGAATGCGGGATCGAGTTCCCGGACAAGCTGGCGGTGCGCGCGCATCGCCGCGAGCGCCACCCGCAGTACAACTTCAGCGCGATGAAGCGGGCCGAGAGCGGACAGCCGCTGGGACAAGTCTGTCCCTTGTGTGGTGCATCGGGAACACACAACACGTGGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTATGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCGCACCCCATGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGGCCAGTACGGGAAGAGTTTCTATGTACGTACACTATATAACACTTGGTTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGTCGGAAACATCTATGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAAAACGTTGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTATGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCCCACCCCACGCACAACTACGAGCAATGCGTGGCCAGCGCGCGTCGGAAACATCTATGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAAAACGTTGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTATGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTATGAGCAATGCGTGGCCAGCGCGCGGCGGAAGCATCTCTGTGACCAGTGCGGGAAGAGTTTCTATGTACGTACACTATATAACACGTGGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTATGAGCAATGCGTGGCCAGCGCGCGTCGGAAACATCTATGTGACCAGTGCTGGAAGAGTTTCTATGTACGTACACTATATAAAACGTTGCTGTACCGCCACTTCCTGGTGTCGCACCCCACGCACAACTATGAGCAATGCGTGGCCAGCGCGCGGCGGAAACATCTCTGTGACCAGTGCGGGAAGAGTTTCTATAATATAACACAGCTGAAGGAACATGCGTTCGCGCACGCGGGGATCAAACCATTCCGCTGCGACCAGTGTCCGGCCGTCTTTAGCTCCAAATCACATCTCAAGTTTCATTCGGAACGCCACGCGCCGCCGCGCCGCGAATGCTCGCACTGTGGGAAAAAGTTTGTTAGCGCCGCCAACCTGTCTAACCATATGAGGAATCTGCACAGTTGTGACATTTCATCTGATACACTACAAAATGAAAATAATGCACAGAAATGGCCGGAAGTCAAGCATATAGTAAATAGTGAAACTACATGGCCTCAAGACAAGCAAACTGAAAATACTGAAGCAGAAAGCAGCTGGTCAGAAGATAAATATTCCCAGCCTGAAGATAGCCCCAAAATAAAACAAGAATGTACAGATAGTACCATTATAAACATTGAATTAAAATCCGAGATAGAAAAAGAAGGTATAACATTTAAAGTCCTAGATAATTTCTACTGCAGCGATATCTATAACAACTATGATGATGACGATGAAGATTATAAACCTGAGAAGAGAAAGAAAAAACAAAAGAAAGAAAGGGTTAAAGAAAAGAACAAATACAGCAAAGAAACTAGTAATAAGAACAAACTTAGCAAAGAAACCAGTCATAAGAACAAACTCAGCAAAGTAACAAGTGGGAAGAACAAACTTAGCAAAGAACAAACAAGTAAGAATAAACTGAGAGATAGAATATTGGAATTGTTAGAGCAAGATGAATTTAAAGATTTAGGTGATGGTGTTGAGATCGACAAGGACCTATTTCTAAAAATATTTAATAAATCTACAATTGGAAGTGTGCGGTGTACAATATTACTGCAAAACCCTGACACGAAAGAAGAAATAGAACGATTAAAAAAGTTCCTACTACACCTTCTCAAAAAGAACAATCCAGAATATGAAGAGATGTTTGATATTGAGAGGCTAGACACAGAAGAGCTTAAACTGCAAGAGTTTAGCGATAGAAAGCTTAGTAAGGAGTATCTAGAGGCCGAGTACAAGTGTGAAGTTTGTTACAAGGTGTTTGATGCGCAGAGACTTTTGGATTATCATAGGAGGTGGCATGAGCCTACGCCCGGTTCTATAACCTGTTCAATTTGCTTGATGCGGTTCGCTCGCCGCAAGTCGCTCGCTCAACATCTGAAGGACAACCACTGCGCCGTCTACCGCTGCAAGCTGTGTCCGCTGCTGACTTACAACTTTTCGGTGATGGTGAATCACTTCCACCACCACAAAGGCAAGGAGTACCCGTGTCCTGTCTGCTTGAGTGTGTTCAGCAACAAGAGTACAATGAACAACCACAGACTACAAGCGCACAGAACCGCGCATATCTGTCCGCTATGCGCACGAAGCTTCGTCTCAGAGAAAGGACTTTACTTCCACAAGCAACTTAAACACAAGGATGAGGTGACGTGTGAGTTATCCACGTGTGTGTGTACCACGTGCGGCGCGGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATGTCCGTCTGACGCACAGCGCGCTCACTATTCACAAATGCTTTCACTGCAAGGAAGTGTTCCGTACGCTCGAGGAGCTGAGGCAGCACAAAGTGGCCTCCAACCACCAGAGGTCGCCTCGGACGGCCCTCAGGAAAACTATCGACAACACGGTGGTCCCTCTGAACAGCGACGAGAAGCCATACTGCGCAGAGTGCGACAAATCATTCAGCACGCGCAAAGGTTATCTCCGCCATTACAACACCAATCACAACGTCAATAGAATTCAAAAATGCGGATTCTGCCAAGCCAAGTTCACGTCGACGGAAGAGATAGAAGCCCACAGAGCCACCTACAACCATCACCCGAAGGTTCGCTACGTGAAGCGACTCACTAGCGCCGCGAAACCAACGCGAACTGATATCAATAACAAGTGTGAACTGTGCGGAGAAGCTGTAGGCGCGGGCCGCGTGCGCAGTATGTACCAGCACTTCGTGACGTCACATCCGGACACGCCCTACTGGTCGGTCTACCGCCGGCCGCAGAGCAGGCATCTCTGCGAGCTCTGCGGGAAGACATTCAAGGACCTCCGTTTCTTCCTCGACCACCGCAACACTCACTCCGGCGCGCGGCCTTACTCGTGCTCTATCTGTGCGCGCACCTACGCCACCAAGCGGCACCTCGGCTGGCACTCAGCGCGACACGCGCCGCCGCGCAGGCAGTGCAAAGACTGCGGAAAGCTGTTCCATAGCGCGGCTAACCTCTTTGCGCACACACGGAGTCACGTGGGCGACCGTCGCTTCAAATGCGACATCTGCAGCAAGGGATTCCTACATCAAGCGGCGCTTAACGAGCACTTTGACACCAGCTACAACGTCAAAATTAGCGACCGCTTCCCCGGGAACTGCTGGAACACCACGATGATGTCCAATCGCAAGAAGACCATCGCAGCCAATCAGCTGCTGAACAGCAATTGA
- Protein Sequence
- MAVYKICRVCLRTDFELRNLDGPVLELFQKICGKTNKPALSDLHKSIPLSSYGIFTQDLKVINIFQETEDNDVTVKVEKFEDVHSDAYTNDNDQIDNDLNDDDTDDDNKYLINFVKVKDKKGVKTKKKKSEIQSLNKSDETNPKKEKHRKPLKDLQEYESVFDIQLFRTDAEIQREFAARKTSPRYLDAPHKCDICYTVYKCQKLADFHMKWHLPSAGDFPCDFCAMRFKTHPAMRKHKTDVHFGRFACKKCPLITYHNHSSTYMSHLRKSHRTEHVCVTCAQTFVSEKGLSVHRKKVHNASSKVDATGTTRCSQCDLTFANQQVYTVHLMNTDKHKDKAEAIIACPECGIEFPDKLAVRAHRRERHPQYNFSAMKRAESGQPLGQVCPLCGASGTHNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCGKSFYVRTLYNTWLYRHFLVSHPMHNYEQCVASARRKHLCGQYGKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYKTLLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYKTLLYRHFLVSHPTHNYEQCVASARRKHLCDQCGKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCGKSFYVRTLYNTWLYRHFLVSHPTHNYEQCVASARRKHLCDQCWKSFYVRTLYKTLLYRHFLVSHPTHNYEQCVASARRKHLCDQCGKSFYNITQLKEHAFAHAGIKPFRCDQCPAVFSSKSHLKFHSERHAPPRRECSHCGKKFVSAANLSNHMRNLHSCDISSDTLQNENNAQKWPEVKHIVNSETTWPQDKQTENTEAESSWSEDKYSQPEDSPKIKQECTDSTIINIELKSEIEKEGITFKVLDNFYCSDIYNNYDDDDEDYKPEKRKKKQKKERVKEKNKYSKETSNKNKLSKETSHKNKLSKVTSGKNKLSKEQTSKNKLRDRILELLEQDEFKDLGDGVEIDKDLFLKIFNKSTIGSVRCTILLQNPDTKEEIERLKKFLLHLLKKNNPEYEEMFDIERLDTEELKLQEFSDRKLSKEYLEAEYKCEVCYKVFDAQRLLDYHRRWHEPTPGSITCSICLMRFARRKSLAQHLKDNHCAVYRCKLCPLLTYNFSVMVNHFHHHKGKEYPCPVCLSVFSNKSTMNNHRLQAHRTAHICPLCARSFVSEKGLYFHKQLKHKDEVTCELSTCVCTTCGAALGSPQLLAAHVRLTHSALTIHKCFHCKEVFRTLEELRQHKVASNHQRSPRTALRKTIDNTVVPLNSDEKPYCAECDKSFSTRKGYLRHYNTNHNVNRIQKCGFCQAKFTSTEEIEAHRATYNHHPKVRYVKRLTSAAKPTRTDINNKCELCGEAVGAGRVRSMYQHFVTSHPDTPYWSVYRRPQSRHLCELCGKTFKDLRFFLDHRNTHSGARPYSCSICARTYATKRHLGWHSARHAPPRRQCKDCGKLFHSAANLFAHTRSHVGDRRFKCDICSKGFLHQAALNEHFDTSYNVKISDRFPGNCWNTTMMSNRKKTIAANQLLNSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -