Eabb009139.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia abbreviata
Gene Symbol
-
Assembly
GCA_943735975.1
Location
CALSER010000068.1:409918-411270[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00029 0.017 15.8 4.2 1 23 90 113 90 113 0.95
2 10 0.00028 0.017 15.8 4.5 3 23 122 143 121 143 0.96
3 10 0.28 17 6.4 5.4 2 23 151 173 150 173 0.95
4 10 2.8e-05 0.0017 19.0 2.5 2 23 181 203 180 203 0.96
5 10 0.00096 0.056 14.1 5.7 1 23 210 233 210 233 0.93
6 10 0.0027 0.16 12.7 6.4 1 23 239 262 239 262 0.94
7 10 3.9e-05 0.0023 18.5 0.4 2 23 270 291 269 291 0.98
8 10 0.0035 0.21 12.4 3.0 2 23 299 321 298 321 0.96
9 10 7.3e-05 0.0043 17.7 4.0 1 23 327 350 327 350 0.95
10 10 4.5e-06 0.00026 21.5 3.5 1 23 360 382 360 382 0.97

Sequence Information

Coding Sequence
ATGGCGGGTGAAATCAAAGAAGAACCGGGCATCAAGCTGGAGGACGAAGGGGTGGGCCCCTCTAGTTCTTACCCCCTCCCCCCACTTCCCTCTTTATCGTCCCTCAAACCTCTTACCCTCCCTCCTATCACAAACCCACCCCACGATGACGGGGTCATGAAATTCATCAGTGTTAATAGTGACTTACTGACGGACGAGCAAAGGGAAATGTACGAATCAGTGTTGACGACATGGAAGCCAATAATGTTCCCCAAGCAGATTAAACGCTACATCTGCCATAAATGCAACAAAGAGTTCAAGAACTACCAAAACCTCTACCTCCACACGACCAGAGTCCATTCTACTGAGGAGCACTCAGTTCTCTGCGACAAGTGTGACAAGTCATTCAAAAATAAGCATTATCTGTACATGCACAGAATGAACAAGCATTATTCCGAGTCGGAGAAATGCTACTGCCAGTTCTGCTTACAGGAGTTCAGGACTCGACGAGCATTGCATATGCACGTTAAGAAGGTCCACCCGAATACCCTACCCGATATCAAATGCGAAGAGTGCGGGAAAGAATTCAACGTTCCTTATAAACTAAGGCATCATATAGAGAGGTGCCATCGAGCTCAGCCAGAGAAACACAAGTGTCATATCTGTCAGAAGATGTACAAGACGGACCTCAATCTAAAGAGGCATTTGCTGTTCCAACACTCGAATATCGAGCGTCATCAATGCGTCTTCTGTCCAATGACTTTCAAGTCCAAACACCATATGAAACGACACGTTTTAAACATCCACCCTCCTTTGGAATCCAAGGTTCAATGCCCGGAATGCTTAAAGGAGTTCAAGAATGACCAATACTTGAAAGAGCATATGCAAATGCATTCTTCGCCTGATACTAAAGTTAAGTGCGAGCTTTGCGAAAAATCTTTCCACTCGCAGCTCAGGCTTAAAAAGCACAAAAAGATCGTTCATCCAACGTACCCGAAATTCCGTTGCGAGAAGTGTAATAAAGAGTTTGCACACGAGCATTATCTAAAGCGGCACGTCGACTCTGTTCATATTGATATCGACGAGGCTTTATACGAACACGAATGCCCACAGTGCGGAAAGAGGTTCAAAATGAAGAAGTATCTAACGAATCATTTGCTGAGGCATGAACAGCAACAAATAAAACGTTTGTCACAGATTGTTAAGACTGTTATGACGAAGAAGGAGAAAGCCGCTAAAGCTGTGAAGCCTAAAACTGAACCGACTAGGAAGTCAGCTCGCGGTCGGAAGAAGAGAGAGGAGATAGAGTTTATCAAGTGTGAGCCAATGTCCAGCTCAGAATCTGAGGGGGAAACAGAGTCAGATTCAGAATGA
Protein Sequence
MAGEIKEEPGIKLEDEGVGPSSSYPLPPLPSLSSLKPLTLPPITNPPHDDGVMKFISVNSDLLTDEQREMYESVLTTWKPIMFPKQIKRYICHKCNKEFKNYQNLYLHTTRVHSTEEHSVLCDKCDKSFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHVKKVHPNTLPDIKCEECGKEFNVPYKLRHHIERCHRAQPEKHKCHICQKMYKTDLNLKRHLLFQHSNIERHQCVFCPMTFKSKHHMKRHVLNIHPPLESKVQCPECLKEFKNDQYLKEHMQMHSSPDTKVKCELCEKSFHSQLRLKKHKKIVHPTYPKFRCEKCNKEFAHEHYLKRHVDSVHIDIDEALYEHECPQCGKRFKMKKYLTNHLLRHEQQQIKRLSQIVKTVMTKKEKAAKAVKPKTEPTRKSARGRKKREEIEFIKCEPMSSSESEGETESDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00321848;
90% Identity
iTF_00705372;
80% Identity
-