Basic Information

Insect: Eupithecia abbreviata
Gene Symbol: -
Assembly: GCA_943735975.1
Location: CALSER010000071.1:1153841-1159302[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00026 0.015 15.9 1.2 1 23 179 201 179 201 0.98

2 10 0.28 16 6.4 0.1 2 21 229 248 228 249 0.93

3 10 0.00017 0.0099 16.5 0.6 3 23 275 295 273 295 0.97

4 10 6.5e-07 3.8e-05 24.1 0.2 1 23 299 321 299 321 0.98

5 10 0.16 9.4 7.2 0.3 1 23 326 349 326 349 0.93

6 10 0.66 39 5.2 0.4 1 23 355 378 355 378 0.92

7 10 6.7e-05 0.004 17.8 0.7 1 23 385 408 385 408 0.98

8 10 7.3e-05 0.0043 17.7 2.6 1 23 414 436 414 436 0.98

9 10 0.00037 0.022 15.4 3.1 1 23 442 464 442 464 0.94

10 10 1.2e-06 7.3e-05 23.2 0.9 1 23 470 492 470 492 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00026	0.015	15.9	1.2	1	23	179	201	179	201	0.98
2	10	0.28	16	6.4	0.1	2	21	229	248	228	249	0.93
3	10	0.00017	0.0099	16.5	0.6	3	23	275	295	273	295	0.97
4	10	6.5e-07	3.8e-05	24.1	0.2	1	23	299	321	299	321	0.98
5	10	0.16	9.4	7.2	0.3	1	23	326	349	326	349	0.93
6	10	0.66	39	5.2	0.4	1	23	355	378	355	378	0.92
7	10	6.7e-05	0.004	17.8	0.7	1	23	385	408	385	408	0.98
8	10	7.3e-05	0.0043	17.7	2.6	1	23	414	436	414	436	0.98
9	10	0.00037	0.022	15.4	3.1	1	23	442	464	442	464	0.94
10	10	1.2e-06	7.3e-05	23.2	0.9	1	23	470	492	470	492	0.98

Sequence Information

Coding Sequence: ATGGAATCGGAAATAATGGTAGAGGCCCTACCGATCCTGGGTACTTGTAATTTATGTCTAAACGAAGGTGCAGTGGAAAGTATGTTGATAACTCACATACATAATGGTTCTTTGGAGATTTATTCAGATATGCTGATGAAATGCTTTGCTATTGACGTGACTCTGCTAGACCTGGGTGATACGAAGCGTCTGATATGTCCGTCCTGCGTACTGCGCTTGCGGGATGCAGTGCTGTTCCGGAAGCAGGTGGAAGTCTCGCTGGCTGCCCTGGAAACTTCTTTTAAGCTGGAGAAGGATGCCCCGTCAGCGGTGAAGCAAGAGGTGGACTATAGCGATGGGTACGACATGGACGGGGCGGCCGTTGATGATGACAATGATGAAGATTACAAAGTACCCGTAAAACAAGAACAAGACAACGGCAAGAAGCAGAAGAAATCAAAAAGAATGGTCAAGAAAACGTCCAACGATCTTCACGAAGTGGAAACAATGTTAGAACTAGGCCTTTTCCCTTTCAAGATTAGAAAAAACAAAATCTACTCATGCACAATATGCACAGAAAAATCTACATACCTAGAAGAGTTGAAAAACCATATGAGTAAACATACAAAGCAGAACATCAACTTGGCTTTCAAGAAAATGATGTTTTCCGACTCCCACAGATTCTACAAATCGTCGGCTAAACTAAGATGCAAGATTTGTACGTCAGATGTGTCAAACTTCGAAGAACTGAGCGCTCATATGGAAAACTGTACAAGGATAAAACACTCAAGCGGTAGCAAATGGTCAAACTTACCCTTCAAGCTGGAAAAAGATCAGACTGATTGCCCGATATGCAAAAAAAGGTTCCTAAACTTTGTCAATTTGAATACACATATGAATATACACTATCCCAATTATATATGCGAGAACTGCGGTAAGGCTTTCGCTTCTAAAGCGAGGTTAAGAGGTCATATGAGAACGCACGAGGAAGGATCCTTCGCTTGTCGGTACTGCCCTGCAGTCTTCGACAGAGTCACCAAACGGGAAAACCATGTATCGAAAGAACATAAAGCCGGTGTCAGATACGCCTGCAGACGCTGTAATATATCCCTCTCATCATTCTACGCGAAACAAAAGCACTTAGCAGAAGTTCACAACGAGGAGTTGAAAAGATACAAATGCAAAGCTTGCCCGCAGAGTTACATCACCCCGGGACATCTTTCAAGTCATGTCCGTAGAGACCACTTGAACGAAAGGAACCATAAGTGCGACAAGTGTGATCTGGCTTTCTATACGAAAAACGCTTTGAAAATGCATCAAATTAAGCATGATGGAGAACGTATACATGTTTGTATAATTTGTAAGAAGTCGTATCAAAGGAAGAAAACCTTGAGAGAGCATATGAGGATACATACTAATGATAAGCGGTTTATTTGTCCGGTTTGTGGTAGGGCGTTTACTCAGAAATGTACTCTGAAGGGACATCTGCGGGTGCATGAGAGGGTTGGACAGCCGTTGCACTCAGTCTGA
Protein Sequence: MESEIMVEALPILGTCNLCLNEGAVESMLITHIHNGSLEIYSDMLMKCFAIDVTLLDLGDTKRLICPSCVLRLRDAVLFRKQVEVSLAALETSFKLEKDAPSAVKQEVDYSDGYDMDGAAVDDDNDEDYKVPVKQEQDNGKKQKKSKRMVKKTSNDLHEVETMLELGLFPFKIRKNKIYSCTICTEKSTYLEELKNHMSKHTKQNINLAFKKMMFSDSHRFYKSSAKLRCKICTSDVSNFEELSAHMENCTRIKHSSGSKWSNLPFKLEKDQTDCPICKKRFLNFVNLNTHMNIHYPNYICENCGKAFASKARLRGHMRTHEEGSFACRYCPAVFDRVTKRENHVSKEHKAGVRYACRRCNISLSSFYAKQKHLAEVHNEELKRYKCKACPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHQIKHDGERIHVCIICKKSYQRKKTLREHMRIHTNDKRFICPVCGRAFTQKCTLKGHLRVHERVGQPLHSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00699506;
90% Identity: iTF_00705375;
80% Identity: -