Eabb008696.2
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- L_1
- Assembly
- GCA_943735975.1
- Location
- CALSER010000065.1:2228018-2235023[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.58 34 5.4 5.8 1 23 21 43 21 43 0.97 2 15 7.8e-06 0.00046 20.7 4.1 1 23 49 71 49 71 0.99 3 15 2.4e-05 0.0014 19.2 0.1 1 23 77 99 77 99 0.98 4 15 2.1e-05 0.0012 19.4 0.1 2 23 115 137 114 137 0.95 5 15 2.8 1.6e+02 3.2 0.3 3 23 161 183 159 183 0.79 6 15 0.28 16 6.4 0.0 3 23 230 250 229 250 0.97 7 15 0.69 41 5.2 0.0 3 23 265 285 264 285 0.91 8 15 0.00018 0.01 16.5 0.4 1 23 293 316 293 316 0.94 9 15 0.011 0.62 10.9 0.1 1 23 321 344 321 344 0.92 10 15 0.0015 0.088 13.5 0.2 1 23 398 422 398 423 0.96 11 15 0.00092 0.054 14.2 0.0 2 23 473 494 472 494 0.96 12 15 0.15 9 7.2 0.0 1 23 502 524 502 524 0.97 13 15 0.81 48 4.9 0.3 1 23 628 650 628 650 0.94 14 15 0.0032 0.19 12.5 0.1 1 20 658 677 658 680 0.95 15 15 0.071 4.2 8.3 0.3 1 23 687 709 687 709 0.94
Sequence Information
- Coding Sequence
- ATGAGAAATCTATTCAAAGTACCAATAATCCTTCTGCAGACCCACTCGGACCAAATGCCGTTCCGCTGCGAGTTCTGCTCGCGCCTGTTCAAGCACAAACGCTCCCGCGACCGGCATGTGAAGCTCCACACGGGAGACAGGAAGTACCGCTGTGCTCATTGCGAGTCTGCCTTTTCAAGGAGCGATCATCTAAAAATCCACATGAAAACCCACGACAACCAGAAGCCGTTTCAATGTACGGTCTGCAACCGCGGCTACAACACCGCAGCGGCGCTGACGTCACACATGCAGGGACACAAGAGGGATAGGGAGGGCCGAGAACCTGACAAGAGGAGGTCAATGCGTTGCCTGCGCTGCGGAGAGGCTTTCCGGAGACCTGATCTACTGCAGGCTCACATGGCCAGCACCCATGGCGTCGACGCGGCCGCCCTTACCCCGCCGCGCCGCGTCGCCTCTCAACCACCTCCAACACTCCTCGCCTGCATGTACTGCACTCGAGACACCTTCACCAGCATGGAACAGCTACAGCTGCACGTCCGAGCCTCTCACTCCGCCCTGCTCAACGGTAGCTCACCAGAGCAGCCAACCCCAACCGATCTCAGCCGAAGAGCTTCCGACGACGCTCCGCCTGCCAAACGCCCGCGTTCCGGAACTCCTCAAACGACCTTATCCCCCAACACGCTTTTATGCAACCAGTGCGATGCAGCTCTACCGGATTTCGAAGCGTTCCGCGCGCATTTGAAGGGACATATCGACGAAGGGGGCGAGTTAACCCGAACAAGCCCAGCTCCATGCGTTCACTGCGGTGCTACATATGCAGACGCGGCTGCATCCGAACGTCATCTCACTGCGCATTACTTGGCAGTGTCCTGTGAATACACTTGCCACAGCTGCGCTCGAGGCTTCCCTACTCCAGATGATCTGCAGAAGCACCTTTTGGATCTACATGCGCATCATCTGTACCGTTGCTCGCTGTGCAAGGAGGTGTTTGACTCTAAAGTTGCGATTCAGGTCCATTTCGCCGTAGCACACAGTGGTGAAAATAAAGTGTGGGTTTGCCGTGGCTGCGGCAGCGGCGCCGGAGCCCTACGCTCGGAGGCCGACGGCGTCGCCCACGTGCGGTCCCGGCACGCGGGCGCGCGGTGCTCTTGCGGAGCCCTGCTGGGAGGCCCGAGGCTGCGCCCCAGGGCTTACAGGTGCCCGGTGCCGACCTGTACTGATGCGTTCGCTGTGCAATACCTGCTGGAGAGGCATATGCAAGTGCATCATGCGATGGCGCAACAGGTGCTCAACGGTGAGATAGCCCGACCAAAGCGCGTTGAAAACAACAACGGTACTGATGACGGCGCCTGTTCGCCTTGCACCACCGAGCCTATTGCCGAGGAGCGGAGACGGAAGAACGGAGCGGTGGCGCTGCAGTGCGCGTACTGCGGGGAGCGAGCAAGGTCCCGGGCGGAGTTAGAGGCGCACACTAGAGCTCACTCGGGCTCCGCGGCGGCGAGGCACAAGTGTCTCATATGCGACGAGATTCTGCCCTCCGCCGCCGTGCTGGCGGAACATAAGTTGACGCATTGCAAGGTGGTGGCCGGCGATACTTGCTCCCGCTGCCGCGCGCGACTTCTCTCCGAGGAGTCGTTCCTGGCGCATATGGCGCGGCACCAGCCCGCGCTGCCCGCGCCCTGCGTCGTCTGCCGGCAGACGCTCGCCTCCGAGGCGGAGGCCAGGCTGCACGCGCGCTTCCATCTGCGACCCAGCGACACAGAGCAAAGATGTGCAATCTGCCTGCGCGCGCTCCCGGAAGGCGAGGGCGGCGAGGGCGCGCGCGCGTGCTCGTCGTGCTACGCACGCCACGCCGCCCCGCGCTCCGCACCCCCCGCCGACCACGACTGCAGACTCTGTCGCCGCGCCCTCGGCTCACCAACCAGACTACAAGCCCATCTTATAGAACATACCTTCGCTGGCATCGGGGCTTTTACTTGCTACCTCTGCTCGGCAGTTTTCACTAGCGCGGCCGGCCTTCAGCGGCATCTACCGGAGCACGCCTCAGCGCCGCGGCCGTACGACTGCGGCCGATGCGGGATGAAATTCTTCTTCCGAGCAGAGTTAGATAATCACGCATTTGTGCATTTAGAAGAGGCTGAGATAGCGCAGCGAGCGTTTTATGAGGCCTACGCGCGTGGAGCGGCCAATGCCTGGGCAGCCTTAGCGCCAGAGCAGGCCCGCGTGACGCCGGCGCCCGAGGTGAAACAGGAACCAGAGATAAAGGAGGAACGTACTGATGAGTATATCGAAGTTGGATCACCACCACCTGTGACGCAGCCGGTGACTCCCCCACCCGTCGTTAAACAAGAAAAGCCTGATGAAGATTGA
- Protein Sequence
- MRNLFKVPIILLQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDKRRSMRCLRCGEAFRRPDLLQAHMASTHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRASHSALLNGSSPEQPTPTDLSRRASDDAPPAKRPRSGTPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHIDEGGELTRTSPAPCVHCGATYADAAASERHLTAHYLAVSCEYTCHSCARGFPTPDDLQKHLLDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGENKVWVCRGCGSGAGALRSEADGVAHVRSRHAGARCSCGALLGGPRLRPRAYRCPVPTCTDAFAVQYLLERHMQVHHAMAQQVLNGEIARPKRVENNNGTDDGACSPCTTEPIAEERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGSAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCSRCRARLLSEESFLAHMARHQPALPAPCVVCRQTLASEAEARLHARFHLRPSDTEQRCAICLRALPEGEGGEGARACSSCYARHAAPRSAPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGMKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAANAWAALAPEQARVTPAPEVKQEPEIKEERTDEYIEVGSPPPVTQPVTPPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01429280;
- 80% Identity
- -