Eabb000532.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000004.1:77789-84606[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.21 12 6.8 0.2 1 21 12 32 12 33 0.93 2 24 8.6 5.1e+02 1.7 0.1 3 20 49 66 47 68 0.85 3 24 0.0033 0.2 12.4 0.7 3 23 82 102 81 103 0.95 4 24 0.0016 0.092 13.5 0.2 2 23 130 152 129 152 0.97 5 24 1.3 78 4.3 0.5 1 11 165 175 165 180 0.83 6 24 0.15 9.1 7.2 0.1 5 23 180 199 177 199 0.95 7 24 1.3 78 4.3 0.5 1 11 212 222 212 227 0.83 8 24 0.15 9.1 7.2 0.1 5 23 227 246 224 246 0.95 9 24 1.3 78 4.3 0.5 1 11 259 269 259 274 0.83 10 24 0.15 9.1 7.2 0.1 5 23 274 293 271 293 0.95 11 24 1.3 78 4.3 0.5 1 11 306 316 306 321 0.83 12 24 0.15 9.1 7.2 0.1 5 23 321 340 318 340 0.95 13 24 1.4 80 4.2 0.5 1 11 353 363 353 368 0.83 14 24 0.13 7.9 7.4 0.1 5 23 368 387 365 388 0.95 15 24 1.3 78 4.3 0.5 1 11 400 410 400 415 0.83 16 24 0.15 9 7.2 0.1 5 23 415 434 412 434 0.95 17 24 1.3 78 4.3 0.5 1 11 447 457 447 462 0.83 18 24 0.15 9.1 7.2 0.1 5 23 462 481 459 481 0.95 19 24 1.3 78 4.3 0.5 1 11 494 504 494 509 0.83 20 24 0.15 9.1 7.2 0.1 5 23 509 528 506 528 0.95 21 24 0.0001 0.0061 17.2 0.6 1 23 541 563 541 563 0.95 22 24 0.00021 0.012 16.3 1.7 1 23 569 591 569 591 0.97 23 24 5e-08 2.9e-06 27.6 1.0 2 23 597 618 597 618 0.98 24 24 2.8e-05 0.0016 19.0 0.1 1 23 623 646 623 646 0.96
Sequence Information
- Coding Sequence
- ATGACGCACAAGCGGCTCACGCACGCGACGTCGCACGTGTGCGTGACCTGCGCGCGCACCTTCGTGTCCGAGCTCGGCCTGCAGACGCATCGCCTGAAGATGCAGCAGGCAGATAGTACGGAGTCCCACGCGGGCTCAGTGCGGTGCGCCCCCTGCGGCCTCACCTTCCACTCGCAGCAAGTGTACACCGTGCATGTACTGAACACTGAACAACACAAGGACCTCGCTAGCGACATTGTGGCGTGTCCCATATGCGGGCTATCTCTCTGCTCCGCGGCGGATGTGAGGGAACATAGACGCTTGCACCACCCGCGGCCCAAGCACGTTCGGGCCAGTCGCGACCCGCACAAGCAAAAGCGAGAGAAGAGCTCAGCCAGCGATGTTATTGAGTGTAAACTGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCAGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCGGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCGGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCGGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCGGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCACTCAGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTAAATTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCAGCGCGGTACGAAGCGGCCAGCGAAAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCGGCGCGGTACGAAGCGCCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACGTGAGTACTTTCCAGTGCGGACTAACAGGCAGCAACAACTTCTGGCTATACCAACACTACCGGACGGCGCACCCCTCGGCGCGGTACGAAGCGGCCAGCGACAGAGAGTTTCTATGTGACCAATGCGGGAAGGGTTTCTACAATAAGACGGTGCTGAAGGAGCATATGTACGTACACTCCGGACTCAAGCCGTTCCGCTGCGAGACCTGCCCCGCAGCCTTCCGCTCCAAACAACATCTTAAGCTACACGAGGAGCGGCACGGGCCGCCGTCCCGCGAATGTCCGCACTGCGGGAAGAAGTTCGCAAGCGCTTCGAACCTCTCCAACCATATACGGTCGCATGGCGCGCGGCGGTATGCATGCGACGTGTGTTCAAAAGGATTCGTGCAATTCTCATCTCTGCGTGAACATATCCGCGGCGTGCATTTGCAGCTCCGCGCGCCGCGCAGTCGCCGTTCCCACAAGGGAGCACTGGACTAG
- Protein Sequence
- MTHKRLTHATSHVCVTCARTFVSELGLQTHRLKMQQADSTESHAGSVRCAPCGLTFHSQQVYTVHVLNTEQHKDLASDIVACPICGLSLCSAADVREHRRLHHPRPKHVRASRDPHKQKREKSSASDVIECKLCGLTGSNNFWLYQHYRTAHPSARYEAASDREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHPSARYEAASDREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHPSARYEAASDREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHPSARYEAASDREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHPSARYEAASDREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHHSARYEAASDREFLCDQCGKGFYVSKFQCGLTGSNNFWLYQHYRTAHPSARYEAASEREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHPSARYEAPSDREFLCDQCGKGFYVSTFQCGLTGSNNFWLYQHYRTAHPSARYEAASDREFLCDQCGKGFYNKTVLKEHMYVHSGLKPFRCETCPAAFRSKQHLKLHEERHGPPSRECPHCGKKFASASNLSNHIRSHGARRYACDVCSKGFVQFSSLREHIRGVHLQLRAPRSRRSHKGALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -