Eabb009642.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000071.1:1186920-1190138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.029 1.7 9.5 0.1 1 23 52 74 52 74 0.92 2 23 0.035 2.1 9.2 0.0 2 23 99 121 98 121 0.93 3 23 0.03 1.8 9.4 0.7 2 23 144 165 143 165 0.97 4 23 0.0012 0.07 13.9 0.1 1 23 169 191 169 191 0.95 5 23 0.0012 0.073 13.8 0.3 1 23 196 219 196 219 0.92 6 23 0.0015 0.086 13.6 1.8 1 23 225 248 225 248 0.96 7 23 0.0032 0.19 12.5 0.8 1 23 254 277 254 277 0.98 8 23 0.13 7.5 7.5 0.9 1 23 337 360 337 360 0.92 9 23 0.29 17 6.3 0.0 2 23 383 405 382 405 0.91 10 23 0.015 0.87 10.4 0.4 1 23 427 449 427 449 0.97 11 23 0.00019 0.011 16.4 3.5 1 23 453 475 453 475 0.97 12 23 0.0018 0.11 13.3 0.5 1 23 480 503 480 503 0.92 13 23 0.032 1.9 9.4 4.5 1 23 509 532 509 532 0.96 14 23 0.22 13 6.7 0.4 1 22 538 559 538 561 0.76 15 23 0.45 27 5.7 0.0 1 23 650 673 650 673 0.83 16 23 9.5e-05 0.0056 17.3 2.9 1 23 740 762 740 762 0.99 17 23 4.9e-07 2.9e-05 24.5 0.2 2 23 767 788 766 788 0.97 18 23 0.00012 0.0071 17.0 1.3 1 23 796 819 796 819 0.96 19 23 0.00045 0.027 15.2 8.5 1 23 825 848 825 848 0.96 20 23 0.048 2.8 8.8 0.7 1 23 854 877 854 877 0.95 21 23 0.036 2.1 9.2 3.8 1 20 883 902 883 905 0.95 22 23 8.6e-07 5.1e-05 23.7 1.6 1 23 911 933 911 933 0.98 23 23 0.0044 0.26 12.1 8.2 1 23 939 961 939 962 0.96
Sequence Information
- Coding Sequence
- ATGCAACAGACTGATACAACAATTTCAAGGGAGTCGATAGGCGCTCGCCAGATCGTGCTGACGAAGAAAAGGGCATTGATGGAAGACAAGGCAAACGCGGGAATGATTTTAAAGTACTCGAATGCGGTAGTCTTTAGATGGCAAAGAGGGAAGTTCATGTGTGCACTTTGCCCTGAAAATTTCGCCAATTTTACAGATTTACGAATCCACTCTGCTGAGCACAATAAGTTAGATATAATCGAGACTTATAAGACTCGTCTCATCTTTCCATTGAACTTGGATATATCAAGTCTTGTTTGCGAAATTTGCAATGCATCGATAAAGGATATAGATGATCTTAAGAGTCATCTTTCCAACGACCACAGTATATCTATAGATGGAAATTACGCAGATGGTGTTATACCATATCGTTTAGTCGGAAAGGGTTTGCGATGTGTGATCTGCGAATCTAGTTTTGACAAATTCATGACTCTATTTATTCACATGAACAGACATTATCCTAGCTATGTCTGTGATTTCTGCGGAAAAGGTTTCTCCGCCGCGAACAAGCTACGATCACATAATGCTATACACAATCCCGGAATGTTTGAATGCAAAGAATGCGACGCAGTGTTCACAAACAGAGCGGCTAAGAATAGACATGTTAGCGGGAAACACCGTCCTAAAGATCGATATAAATGCCCGATTTGCGATGAACATTTTAATTCATACTACACGCGGGTGCAGCACCTCAAACTTGTCCACGGGCAAACTTCAGAATACCGCTGTTCCTATTGCCCTACTGTGTTTGACACCGGCGCTTCTAGATATAATCACATACGAAGTTTCCACTTGAAGAAGCATAGACTGAATCAGGAACAGGATTCAACAAATGCCAGCCAATCAGTAGACGCGTGGTCCCCCAAGATCGTGTTGAAGCAGAAACGGAAATTAATAGAAGACAAGGCAAACGCTGCCTTACTTTTAAAATATTCCAACGCTGTTGTCTTCAAATGGCATAGAGGGAAATTTAAATGCGCATACTGTACTCAAAATTACGCTGACTTTTCTGAAATTAGATCTCACACAGACCAACAACACAATAAATTGGACTTGTTCGAAACGAACGGTACTGTATTTCCTCTGAACGTCGATATTACGAACCTCATCTGCAATATATGCAACATCTTATTCAATGAAGTCGAAGGTCTAAAGAACCACCTTATAGATGTTCATAGCATATCTATTAACAAAGTTTACCCGGATGGTGTAATACCGTACCGGCTAACAGGACACCAATTTCGTTGCGCCGTCTGTGATTCGGTCTTCGACAAATTTATGACCCTCTTCATCCACATGAACGATCATTATCAGAGTTTTGTTTGTAAACATTGCGGCAAAAGTTTCTCGGCCAGTAAAAAGTTCAGATCACACAAAGCTATACACAATCCTGGAAAGTTCAAATGCAATGAGTGTGATGCTGTTTTCACGAACAGAATCGCTAAGAACAGGCACGTAAGCGAAAAACACCGACCCAAAGAACGGTACCGATGTCCCATCTGCGATGAACATTTCAATTCTTACCACAGACGATTGCAACACCTCAAAAAAGTGCACGGACAAGTGTCTGAGTACCGTTGCACGTACTGTTCGGAAGTCTTCGTCAGTGGAACAGCCAGATATGGACATGTCCAACGGATTCATTTGAAAAAACGCCAAAAAAAGAAAAAAAAAGTTCTAGTACCTGACGACCGGAAACTTCTCACACAAACTCAAGATGAGTTTCAGTCGGAAACCGTCCGAAGTTTCGTGCCGATACCGACGTCTCACTGTCAATTTTCTTTTTTAGGAGACCCTGTCCGGAGCATTGGTTGGATACCGAGGCGAAAATACTATGACCACAGAGACAATGCAGCGCTTATTCTAGAATATTCCAACATTTGTCCATTTAGGTGGCACCGAGGCATGTTTGTCTGCGGGATCTGCCCACAAAAATTTGCCAAGTTCGAACCTGTCAGAGAACATGTCGCCTTAGAGCATCCCAACAAAATTGAAGCACTTAAGCCTATAAAAAAGTACTTCCTAAAATGCGATATAACAGACCTTAAATGTATGATATGTCTCGCAAGCATAAAAGACATCAACGATTTTGTCGAGCATTTAAAAGATGATCACGGTAAGCCGCTTGTCAACGAATGTAGTATGGGTATCATACCCTATCGATTAAACACTGCGTTGTACAAATGTACGCACTGCCCTGAAACCTTTAACTTCTTCAACTCTTTGAACAGTCACATCAACATCCACTACCCGAATTCTGTATGTCCTATATGCGGAAAGGCTTTCTCTAATAACGGTAAAATGAACTCGCATATGCAAACACACGGCATCGGCACCAAGGGGGTATTCAAATGCTCCAAATGTAACGAGGTTTTCACTAGCCCATACGATAAACAAAAACACGTATTATCCTCACACTCTAAACTGAAAAGGTACAGATGCCCACATTGCCACGAAAGCTTCAAAAGATACTCGCACAGGTTGAAGCACATGAACGAATATCACGACACTAAAATTGATTTCCCCTGTAGCCTTTGCCCTGCTGTGTTTACAATGCACAATATGAGAACCAAGCACATCCAACAAGTTCATATCAAGGAGAAGCGTTATAGCTGCACTGAATGCTCGCACCAGTTCGTGACCATCTCCATGCTTCGAAGACACAAGATCTGTCACACCGGCGAGAGGAAATACCACTGCGAAGTTTGCAATAAATCGTACGCGCGTCCTTACACGCTAAAAGAACATATGCGAATACACACTAATGATCGTAGGTTTTCCTGTTTGCACTGCAATAGTGCGTTTATTCAGAAATGTAGCCTTAAAAGTCATATGAAGACGCATCACCCCAACCATGAGTTACTGCCTGAAAGCAAACCTACAGTTAAGAAGGGTGATTAA
- Protein Sequence
- MQQTDTTISRESIGARQIVLTKKRALMEDKANAGMILKYSNAVVFRWQRGKFMCALCPENFANFTDLRIHSAEHNKLDIIETYKTRLIFPLNLDISSLVCEICNASIKDIDDLKSHLSNDHSISIDGNYADGVIPYRLVGKGLRCVICESSFDKFMTLFIHMNRHYPSYVCDFCGKGFSAANKLRSHNAIHNPGMFECKECDAVFTNRAAKNRHVSGKHRPKDRYKCPICDEHFNSYYTRVQHLKLVHGQTSEYRCSYCPTVFDTGASRYNHIRSFHLKKHRLNQEQDSTNASQSVDAWSPKIVLKQKRKLIEDKANAALLLKYSNAVVFKWHRGKFKCAYCTQNYADFSEIRSHTDQQHNKLDLFETNGTVFPLNVDITNLICNICNILFNEVEGLKNHLIDVHSISINKVYPDGVIPYRLTGHQFRCAVCDSVFDKFMTLFIHMNDHYQSFVCKHCGKSFSASKKFRSHKAIHNPGKFKCNECDAVFTNRIAKNRHVSEKHRPKERYRCPICDEHFNSYHRRLQHLKKVHGQVSEYRCTYCSEVFVSGTARYGHVQRIHLKKRQKKKKKVLVPDDRKLLTQTQDEFQSETVRSFVPIPTSHCQFSFLGDPVRSIGWIPRRKYYDHRDNAALILEYSNICPFRWHRGMFVCGICPQKFAKFEPVREHVALEHPNKIEALKPIKKYFLKCDITDLKCMICLASIKDINDFVEHLKDDHGKPLVNECSMGIIPYRLNTALYKCTHCPETFNFFNSLNSHINIHYPNSVCPICGKAFSNNGKMNSHMQTHGIGTKGVFKCSKCNEVFTSPYDKQKHVLSSHSKLKRYRCPHCHESFKRYSHRLKHMNEYHDTKIDFPCSLCPAVFTMHNMRTKHIQQVHIKEKRYSCTECSHQFVTISMLRRHKICHTGERKYHCEVCNKSYARPYTLKEHMRIHTNDRRFSCLHCNSAFIQKCSLKSHMKTHHPNHELLPESKPTVKKGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -