Eabb019566.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia abbreviata
Gene Symbol
-
Assembly
GCA_943735975.1
Location
CALSER010000233.1:61-7310[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0018 0.11 13.3 0.0 1 20 112 131 112 133 0.94
2 26 0.6 36 5.3 3.8 1 23 163 185 163 185 0.97
3 26 0.00089 0.053 14.2 1.4 2 23 190 212 189 212 0.95
4 26 0.11 6.4 7.7 4.9 3 21 217 235 216 236 0.92
5 26 0.002 0.12 13.1 3.1 1 23 245 268 245 268 0.97
6 26 0.0061 0.36 11.6 5.6 1 23 274 296 274 296 0.98
7 26 0.00088 0.052 14.3 1.7 1 23 303 326 303 326 0.97
8 26 0.0085 0.5 11.2 0.1 2 21 440 459 439 460 0.93
9 26 0.023 1.3 9.8 1.6 1 23 490 513 490 513 0.94
10 26 0.00041 0.024 15.3 0.9 3 23 520 540 518 540 0.98
11 26 1.3 76 4.3 5.5 1 20 543 562 543 564 0.91
12 26 0.0003 0.017 15.8 1.3 1 23 576 599 576 599 0.94
13 26 0.00015 0.0088 16.7 1.7 1 23 605 627 605 627 0.98
14 26 0.12 7.2 7.5 1.0 5 23 637 655 635 655 0.97
15 26 0.0017 0.099 13.4 0.9 1 23 661 684 661 684 0.98
16 26 0.015 0.86 10.4 0.2 3 23 694 715 693 715 0.96
17 26 0.00049 0.029 15.1 0.1 2 21 838 857 837 858 0.94
18 26 1.4 81 4.2 0.0 3 23 865 886 863 886 0.95
19 26 0.1 6 7.8 0.0 3 23 893 914 892 914 0.92
20 26 4.3e-05 0.0025 18.4 0.6 2 23 920 941 919 941 0.95
21 26 0.025 1.5 9.7 3.2 2 20 945 963 944 964 0.94
22 26 1.5e-05 0.0009 19.8 0.3 1 23 989 1012 989 1012 0.95
23 26 0.0007 0.041 14.6 2.2 1 23 1018 1040 1018 1040 0.96
24 26 0.043 2.5 9.0 0.2 1 23 1046 1068 1046 1068 0.98
25 26 0.025 1.5 9.7 0.1 1 23 1074 1097 1074 1097 0.94
26 26 7.3e-05 0.0043 17.7 2.0 1 23 1103 1125 1103 1126 0.96

Sequence Information

Coding Sequence
ATGGAAGATGGCAACACTCCGCGACAGCTGTGCCAACAATGTATGTCCGATATCACCGCCTTTCTACCATTCCTGAGACTCTGCAAACAATCCGCCGCATATTGGAGCTTTCTATCCGAAAATTTGATCAACCTTTCTTCCCAGAAGACTTTTAACACAGCTTTCATCTTTGTCAACGATAAAATAGATAAAGTTACCAACGTGTTCGAGAAAAGGGATAGAAACAAGAATAAGTTGTGGCATGTCGTGACAAAGCGGATTAACCAGCTGGAGTCGGCGAGACGGACACTAGAGTCCGACGACAATGAACCAACGAAGCCGGGAAAGTTTCTCTACACTTGCGTAGAGTGCGGTGCGAAGTTTACCCGGTTGGAGAACATTAACAATCATTTAGCGAGCCAAAACAAGCGTTTCTGTGCTCATTGCGAGCAGATTATCGAGCTTAAAGCTTTTGGAGCGCATCTGGAGTCGCATTCAATCCCTTTCTATACCTGCAAGATGTGCTCTGTACCCTTTGAGTGTAAATACCAGTTTATAAAACACAAAAGTGTGCATCAAGGTAGAATCATGTGTGGGGAATGCAAGATCACCTTTCCCTCAGCGCATCACCTAAATATTCACGTTAACAGGAAGCATGAGCGCGCTTCATGCGTCAAATGTAATAAAAAGTTTTCTAATCGCATATGTTTTAACAAGCATCGAAGTAAATGCAAGTCTAGGATCTCTGAGAAGTATATTTGTGATCACTGTTCAAAGGAGTTCAGTGAGAAGGGGCATATTAAGCTGCACATTTATACAATGCATTCAAAGGTCTCGTCCCATCAATGCGAACTGTGCGGGAGAAAGTTTAACAGTGCGTGTCACTTGGACGAACATAAAGAAACCCATAATGTGATACCAGATAGATATGTCTGCCCATTTTGTGGCGGGCGCTATAGCTCCTCGGGAGGCTATCGAAAGCATTTGAGACATAAGCATTATAGAACTAATCCAGAACTGAAGATGGATATGATATGCACGTGCGATGTGGACGACGGGCCAGCGCTCCCGCCGGGGCTCTGCGGCGTCTGCGCAGGCGACGCTATATCTGCCGCTAAATTCAGAAAACTCACCGAAAAGTCTGCGAAATGCTGGAGCGAAGCCGCCCAATACCTCTCACGAATAGACAGCGAGAGCAACGACACGAAAACACTGCTTTACGTCCACGAAGAACACACTTTGATATTCTACGAGAAACGGGCCAAGAGTGCTAAATCTGCGGTCAAAGCTCTCGGAAACTACGAGAAGGCACCAACGTTCAATAGAAAGAACCCGATTTCATGCCCATTCTGCGGTAAGCGGGTGATTTCTGTGCAGAATCTTAACCAACATCTTCAAAACAGCTCGAAAGCAGTGTGTATTTGCGGTTCCCTTATGGAGAAATCGGAAATCTGTGAACACTTGCGAGAGATACACCAGATCGAGGTCTTCGAATGCAGCATCTGTCATGAGCAGTTTCAGAGTAATGAGGTTTTAAAGTGGCATAGCAGTAAATCCCACGGCTCTAAGTCGTTCGGTTGCGAGCATTGCGGACGTGGTTACAGAAACGAGAGAGCCTTGCGGGCCCATTACTACACCCACACTTTGTTCGACTGCTCCGCTTGCGGGAGAACTTTCGAGAACAGCCGATGTTACCACCACCACAAGACTACATGCAAAACTAAACATAACAATGATTTCAGTATCTTTGAGTGTCATGACTGCGGACAGAAATACGACAAGAAAGGATCTCTCAGGATACATGTGATACAAAAACATTTGAATATCTTGCCTTACGTTTGTCAGGTCTGCGGGAAGCAAACTTCTACCATAAGCCATTTGAAATCACACTCTAAAGTTCACGACGTAGATAGGAAGACTCTAGAATGCCACTGCGGGGCCAAGTTCCGGACTGATATAGGGTACCGTTTACATATGAGAATCCACAGCGGTTTGAGGCCTTTTAAATGTGAGGAGTGCGAGGAGAGTTTCATATCGGCGTCTCGACGCTCCGATCATATGAAGAGACGTCATAAGAGTGTGAAAGATATGGCGCATGGTTGCGAGCAATGCTTGGCTCGGTTCATCAGGCCTTGGGAGCTGAAGAAGCATTACAAGCTGTCGCATTGTTCGATAGTGGATGTGCAGCCAGCGAAGCGGCAGAGGTCGACTATAAAAGAAGAAACCTTCTGTCCGGGCGGTGTTTGCGTGGCTTGCGCAAGTGCAGCGCTGGCCGCGGAAGAGTTCCGTTTATTCGTCCGCAACGCCGCCTCGCTCTGGCGCCGCGCCATCATCAACCTCTCCCAGCTGCCCTACGAGGCTTCCGACAACGCAAAATCAGTTTGCGCGGTCGTTTCCCCCAACATAACTGTCGATACACACAGCGATCTAGACGCCGGCGATGCGACTGAAGTCATCGATAAATTGCAGTCGAAGTTGATTAAGAAGAAAAACGAGAGAAAACCCCGCGTTCTCCGCACCGGGCTGAACGTAACCTGCCCTGACTGTAACAAGCAGTTCGCAGGTCCTCATTTACTGCAAACGCATCTTCAGAACAGCGATAGGAAAGATGCTTGTGGAATTTGCGGCGCCGTCGTTGTTAAAGGTGCTGGGTTGAAATATCACCTCGCAACGGTGCATAGAGAACCCGCGATCCTGTGCAAAGAATGCCCGACCGTTGTGATCACAGAGGCTGAGCTCAAAGCACATGAGAGCTTAGCTCACAAACCTGGGGCACTAAACTGCACCGCTTGCGGTAGAACCTTTACCCGCAAAGGGTCGTACGAAAGCCATATCCAGATGCACGTCGTCTTGACCTGCAGACTCTGCGGTACGCAATTCTCTAACAGAAGCTGCTTCCGCCAACATAGATCCTGTTGCGAACCCAACGCAAAACCTACATCTATCCCCCGCATACGTCGTTCGAACAACCGCGACCCGGGCCAATACGTCTGCGACTACTGTCAAAAGATGTACAGCTCTCGGCCGCAATTGAAGAATCATATCCTCTGGATCCACTTGGATCACAGGCCGCACCAGTGCTCCTTCTGCGGGAAGCGATTCTACACATCAGCGAGGTTGAACGAGCACACCGTTGTCCATACGAGAGTTAGGAACTTTGAGTGTGACCTATGTGACGCGAAGCTAGTATCGAAAAGTGCTGCGATTTACCACAGACGAAGGCATACGGGGGAGAAGCCCTACATTTGTGACGACTGTGGAGCAGCCTTCATCTCCTCGTCGAGGAGGCTAGAACACGCTAAACGGAAACACAATAGAGGGATTCGGTTCAAGTGTACGGAGTGCACCGCTAGCTTCGTAAGGAGACGGGAGCTTGAGAAACACGTGGCGAAACATCATACAGCCACGGGAAAATCTGAGGCATTAGTAAGGCTCTTCAAGCTTGATGTTATTTCTTAG
Protein Sequence
MEDGNTPRQLCQQCMSDITAFLPFLRLCKQSAAYWSFLSENLINLSSQKTFNTAFIFVNDKIDKVTNVFEKRDRNKNKLWHVVTKRINQLESARRTLESDDNEPTKPGKFLYTCVECGAKFTRLENINNHLASQNKRFCAHCEQIIELKAFGAHLESHSIPFYTCKMCSVPFECKYQFIKHKSVHQGRIMCGECKITFPSAHHLNIHVNRKHERASCVKCNKKFSNRICFNKHRSKCKSRISEKYICDHCSKEFSEKGHIKLHIYTMHSKVSSHQCELCGRKFNSACHLDEHKETHNVIPDRYVCPFCGGRYSSSGGYRKHLRHKHYRTNPELKMDMICTCDVDDGPALPPGLCGVCAGDAISAAKFRKLTEKSAKCWSEAAQYLSRIDSESNDTKTLLYVHEEHTLIFYEKRAKSAKSAVKALGNYEKAPTFNRKNPISCPFCGKRVISVQNLNQHLQNSSKAVCICGSLMEKSEICEHLREIHQIEVFECSICHEQFQSNEVLKWHSSKSHGSKSFGCEHCGRGYRNERALRAHYYTHTLFDCSACGRTFENSRCYHHHKTTCKTKHNNDFSIFECHDCGQKYDKKGSLRIHVIQKHLNILPYVCQVCGKQTSTISHLKSHSKVHDVDRKTLECHCGAKFRTDIGYRLHMRIHSGLRPFKCEECEESFISASRRSDHMKRRHKSVKDMAHGCEQCLARFIRPWELKKHYKLSHCSIVDVQPAKRQRSTIKEETFCPGGVCVACASAALAAEEFRLFVRNAASLWRRAIINLSQLPYEASDNAKSVCAVVSPNITVDTHSDLDAGDATEVIDKLQSKLIKKKNERKPRVLRTGLNVTCPDCNKQFAGPHLLQTHLQNSDRKDACGICGAVVVKGAGLKYHLATVHREPAILCKECPTVVITEAELKAHESLAHKPGALNCTACGRTFTRKGSYESHIQMHVVLTCRLCGTQFSNRSCFRQHRSCCEPNAKPTSIPRIRRSNNRDPGQYVCDYCQKMYSSRPQLKNHILWIHLDHRPHQCSFCGKRFYTSARLNEHTVVHTRVRNFECDLCDAKLVSKSAAIYHRRRHTGEKPYICDDCGAAFISSSRRLEHAKRKHNRGIRFKCTECTASFVRRRELEKHVAKHHTATGKSEALVRLFKLDVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00697576;
90% Identity
-
80% Identity
-