Basic Information

Insect: Eupithecia abbreviata
Gene Symbol: -
Assembly: GCA_943735975.1
Location: CALSER010000086.1:1142207-1145270[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.9e-08 1.1e-06 29.0 1.8 1 23 177 199 177 199 0.98

2 12 8.9e-08 5.2e-06 26.8 1.2 1 23 205 227 205 227 0.98

3 12 0.00072 0.042 14.5 4.5 1 23 233 255 233 255 0.93

4 12 7.5e-06 0.00044 20.8 1.7 1 23 260 282 260 282 0.97

5 12 1.3e-05 0.00078 20.0 1.7 2 23 287 308 286 308 0.97

6 12 2.4e-05 0.0014 19.2 0.3 1 23 313 335 313 335 0.98

7 12 3.7e-07 2.2e-05 24.9 1.2 1 23 341 363 341 363 0.99

8 12 1.4e-05 0.00085 19.9 1.4 1 23 369 391 369 391 0.98

9 12 7.9e-08 4.6e-06 27.0 2.3 1 23 397 419 397 419 0.99

10 12 6.9e-07 4e-05 24.0 1.2 1 23 425 447 425 447 0.97

11 12 0.00023 0.013 16.1 1.3 3 23 455 475 453 475 0.96

12 12 1.7e-06 0.0001 22.8 3.9 3 23 485 505 484 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.9e-08	1.1e-06	29.0	1.8	1	23	177	199	177	199	0.98
2	12	8.9e-08	5.2e-06	26.8	1.2	1	23	205	227	205	227	0.98
3	12	0.00072	0.042	14.5	4.5	1	23	233	255	233	255	0.93
4	12	7.5e-06	0.00044	20.8	1.7	1	23	260	282	260	282	0.97
5	12	1.3e-05	0.00078	20.0	1.7	2	23	287	308	286	308	0.97
6	12	2.4e-05	0.0014	19.2	0.3	1	23	313	335	313	335	0.98
7	12	3.7e-07	2.2e-05	24.9	1.2	1	23	341	363	341	363	0.99
8	12	1.4e-05	0.00085	19.9	1.4	1	23	369	391	369	391	0.98
9	12	7.9e-08	4.6e-06	27.0	2.3	1	23	397	419	397	419	0.99
10	12	6.9e-07	4e-05	24.0	1.2	1	23	425	447	425	447	0.97
11	12	0.00023	0.013	16.1	1.3	3	23	455	475	453	475	0.96
12	12	1.7e-06	0.0001	22.8	3.9	3	23	485	505	484	505	0.97

Sequence Information

Coding Sequence: ATGTCCTCTGTGTGCAGAGTTTGTCTGGCCGTTAATACGAGGATGCACAGGGTTGAAAATAATCACCTGATTGTGATTTATGAGAAATTAGCCAGTGCTCAGTTGATGACAGATGACGAAAGACCCAACACAATATGCTACACTTGCTACCCACATCTACAAAACTGCAGAAAATTCTCAGACCTCGCCCACAAGTCCGAAAAAATCCTACGAGACCTTCTACGAAAAGGATCCAAACTTACCTCCAAAAATATATCTCTCCATCTTAATCATACTAAAACCTTTGAACTGTCAAAGAGAAATACTCTCTCATTAGAAATACCAACAAATGATACTGAAAACCTTAGACCGTCCAATCAGAGCGACTACATTTGCATGTACGAAGCGCAACCTGTTAAAGTGAAAACAGAACGATTAACAGTAGATACCCCTGACGTACCCGTGAAGCAAGAGTTTTCTGATGAAGGCGATAATGGCGCCGATGCTTTAGCATTATCGCCGAAGCATGAAAGCTCCGAAGAAAATATTTATGCTTGCGATATTTGCGACAAAACTTTCACATTCAACTCAAATTTACAGAGACACCGACGTTCCCACAGTAGTATCAAAGCTTTCCCTTGCGACGTGTGTGACAAATCTTTTAACTACAAATACGATTTAACACGACATCAAAAAATACACACCGGCGAAAGACCTCACGCTTGCAACAAATGTAACAAAAAATTTCGATTAAAAGGCCATTTACGAGTCCATAAAGTTATACACGGAGACAACGAATACCCTTGCAAATACTGTGACAAAACTTTCAGCCAACTAACCTTCTTGCAATCCCACAAAGAGGTCCATAAAAAAGAGAAAACATGCAAAGTTTGCAACAAGACATTCGAACAACGTAAGCTTCTACTCTCTCACATCAAAATCCACGCTGCAAATTCATATTCCTGCGACCAATGCGACAAATCCTTTCCTATCAAGGTCAGACTTATCCGACATATGAGTATTCACACGGAAGAGAAGAAATTCACTTGCGACAGATGTGCTAAGGCCTTTACGACTAGCGGGAGCCTCCGCCAACATATGCGAACTCACAGCGGCTTGCGACCTTACTCCTGCGAACAATGTGAAAAGACATTTTTAAGAAAGTTCGAGCTGAAAATCCACATGAGGGTTCACACTGGAGAAAAGCCATTTAAATGCAACATCTGTGAAAAGAGCTTCAGTCAGAGCAGCTCCTTAAAAGTCCACAAGCAGACCCATTCCGGTGAAAGACCTTTTACATGTGAAATTTGCGGGAAAACGTTCGGGGATAAATATACGATGAGGAAACATATGTCATTGCATGGTGGGGCTAGACCAACAGCCTGTGAGCTCTGTGGAAAGATTTGCAACTCGAGAAGTAGTCTCTACTACCATATGAAGGCACATAGAGAGGGCCCAGAAGACAAACCGGCATGCGATAGGTGTTATAAAACGTTTAGTAATAGAAGTCATCTTACAAGACACATGAAAATTCATTTGCGGGGATCATTGCAGTGA
Protein Sequence: MSSVCRVCLAVNTRMHRVENNHLIVIYEKLASAQLMTDDERPNTICYTCYPHLQNCRKFSDLAHKSEKILRDLLRKGSKLTSKNISLHLNHTKTFELSKRNTLSLEIPTNDTENLRPSNQSDYICMYEAQPVKVKTERLTVDTPDVPVKQEFSDEGDNGADALALSPKHESSEENIYACDICDKTFTFNSNLQRHRRSHSSIKAFPCDVCDKSFNYKYDLTRHQKIHTGERPHACNKCNKKFRLKGHLRVHKVIHGDNEYPCKYCDKTFSQLTFLQSHKEVHKKEKTCKVCNKTFEQRKLLLSHIKIHAANSYSCDQCDKSFPIKVRLIRHMSIHTEEKKFTCDRCAKAFTTSGSLRQHMRTHSGLRPYSCEQCEKTFLRKFELKIHMRVHTGEKPFKCNICEKSFSQSSSLKVHKQTHSGERPFTCEICGKTFGDKYTMRKHMSLHGGARPTACELCGKICNSRSSLYYHMKAHREGPEDKPACDRCYKTFSNRSHLTRHMKIHLRGSLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705290;
90% Identity: iTF_00700320;
80% Identity: -