Eabb012401.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia abbreviata
Gene Symbol
-
Assembly
GCA_943735975.1
Location
CALSER010000105.1:314799-323972[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2e-07 1.2e-05 25.7 1.7 1 23 10 32 10 32 0.99
2 19 0.0027 0.16 12.7 0.2 6 23 46 63 44 63 0.96
3 19 2e-07 1.2e-05 25.7 1.7 1 23 69 91 69 91 0.99
4 19 0.0027 0.16 12.7 0.2 6 23 105 122 103 122 0.96
5 19 2e-07 1.2e-05 25.7 1.7 1 23 128 150 128 150 0.99
6 19 0.0027 0.16 12.7 0.2 6 23 164 181 162 181 0.96
7 19 2e-07 1.2e-05 25.7 1.7 1 23 187 209 187 209 0.99
8 19 0.0027 0.16 12.7 0.2 6 23 223 240 221 240 0.96
9 19 2e-07 1.2e-05 25.7 1.7 1 23 246 268 246 268 0.99
10 19 0.0027 0.16 12.7 0.2 6 23 282 299 280 299 0.96
11 19 2e-07 1.2e-05 25.7 1.7 1 23 305 327 305 327 0.99
12 19 0.0014 0.081 13.7 2.0 1 23 334 356 334 356 0.99
13 19 1.9e-05 0.0011 19.5 0.5 1 23 362 384 362 384 0.96
14 19 2.7e-06 0.00016 22.2 0.2 1 23 390 412 390 412 0.97
15 19 1.7e-05 0.001 19.6 1.9 1 23 418 441 418 441 0.95
16 19 4.6e-06 0.00027 21.5 1.1 1 23 447 470 447 470 0.94
17 19 7.4e-06 0.00044 20.8 1.4 2 23 477 498 476 498 0.97
18 19 1.4e-05 0.00083 19.9 1.7 1 23 504 526 504 526 0.97
19 19 0.012 0.72 10.7 0.0 1 21 532 552 532 556 0.91

Sequence Information

Coding Sequence
ATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGTTAGTGTTAGTTACAGACATGGGCTCTATGCACTATGCAATAGAAGCTACAACTCACGCACACTACTGCAAGAGCACATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGTTAGTGTTAGTTACAGACATGGGCTCTATGCACTATGCAATAGAAGCTACAACTCACGCACACTACTGCAAGAGCACATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGTTAGTGTTAGTTACAGACATGGGCTCTATGCACTATGCAATAGAAGCTACAACTCACGCACGCTACTGCAAGAGCACATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGTTAGTGTTAGTTACAGACATGGGCTCTATGCACTATGCAATAGAAGCTACAACTCACGCACACTACTGCAAGAGCACATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGTTAGTGTTAGTTACAGACATGGGCTCTATGCACTATGCAATAGAAGCTACAACTCACGCACACTACTGCAAGAGCACATGAACATACACACAGGCAGCCGACCGTACCGCTGCCAAGTGTGCGACAAGACGTTTGCCTCCAAGTACACTATGACGGCGCATATGAAGACGCATCAGGCGCGACCCCGTCCCTTCAAATGCGGCACGTGCCTCAAGTCATTCCTCTCGCAGCAGAATCTGAACCAGCATGAGAAGACTCACCTAGGTATCAAGAGCTTTGTCTGCGGGACTTGTGATAAAGCCTTCGCCACGCAGCACAGCCTAGAAAGCCACTACGTAGTCCACAGCGGGACTAAGAACCACGTCTGTGACGTGTGTGACAAGGGCTTCGCGAGGCGCGCGGAACTCAAGGACCACGTTAGAATACATACAGGCGAGCGTCCATTCGCCTGTAACATTTGCGACGCGCGTTTCTCGCAGCGCTCGAACCTGCACTCCCACAAGCGAGCCACGCATCTCAACGACAAGCGGCACGCCTGCCCCGACTGTCCCAAGCGGTTCAAACGACGCAGACTCCTCCAGTACCATATAAAGGCGGCGCACACGGGCGAGCGACCGCTAGTCTGCGAGCTCTGTCAAACTACGTTCGTGTACCCCGAGCACTTCAAGAAACATATGCGGATACATAGCGGGGAACGTCCTTACTACTGTGAGATCTGCGGCAAGTCGTTCAACTCCCGCGACAACAGGAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCATACGAGTGCCTCGCGTGCGGCGCCTCTTATATGCGCAAGCGAATGCTCGTCGCGCATATGAACGCTAACGGTCATTTAGCAGAATCAATAGTGGTGAACCAGCCACGAGTTACGAGAGTCACTGAAGCTGTCTCTCTTTTCTCCTTCCACTCCTCGCGATCCAACGCTGCAACAGGCCATGATGGAAGATGTGCTCGAGGCTCGTCGCGCCATCTCATCCTGGGCCTTCCACGTCGCCTCTTAGCGTTGGGTGGGCTCCACTCTGTGGTGGTCTTTGCCCACAAGTCGCTGGACATACGGCAGACGTGTCCGGCCCAGTTCCACTTCAGGCTTCCGGCGGTCTGA
Protein Sequence
MNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQVSVSYRHGLYALCNRSYNSRTLLQEHMNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQVSVSYRHGLYALCNRSYNSRTLLQEHMNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQVSVSYRHGLYALCNRSYNSRTLLQEHMNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQVSVSYRHGLYALCNRSYNSRTLLQEHMNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQVSVSYRHGLYALCNRSYNSRTLLQEHMNIHTGSRPYRCQVCDKTFASKYTMTAHMKTHQARPRPFKCGTCLKSFLSQQNLNQHEKTHLGIKSFVCGTCDKAFATQHSLESHYVVHSGTKNHVCDVCDKGFARRAELKDHVRIHTGERPFACNICDARFSQRSNLHSHKRATHLNDKRHACPDCPKRFKRRRLLQYHIKAAHTGERPLVCELCQTTFVYPEHFKKHMRIHSGERPYYCEICGKSFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNANGHLAESIVVNQPRVTRVTEAVSLFSFHSSRSNAATGHDGRCARGSSRHLILGLPRRLLALGGLHSVVVFAHKSLDIRQTCPAQFHFRLPAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-