Eedi036662.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000029.1:4507747-4533535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.12 17 7.4 0.1 2 23 537 558 536 558 0.95 2 10 0.12 17 7.4 2.1 1 23 563 586 563 586 0.96 3 10 6 8.6e+02 2.1 0.8 5 23 593 612 591 612 0.91 4 10 3.1e-05 0.0044 18.7 1.9 1 23 615 638 615 638 0.97 5 10 0.011 1.5 10.7 1.4 2 23 642 664 641 664 0.92 6 10 0.008 1.2 11.1 0.2 3 22 676 695 675 699 0.93 7 10 6.3e-06 0.0009 20.9 0.2 2 23 708 730 707 730 0.94 8 10 0.043 6.1 8.8 1.8 1 23 736 759 736 759 0.92 9 10 0.00014 0.019 16.7 0.6 3 23 770 790 769 790 0.98 10 10 6.6e-05 0.0094 17.7 0.4 1 23 796 819 796 819 0.97
Sequence Information
- Coding Sequence
- aTGGACGTGGATATGAACCGAGGAGTCGAAATTAAGGAAGAAATAACAGTCGAGGAGAATCCCTACCTTTGTAGAATATGTTTAAGTGTTGGCAGGAAAATGTTTCCGTTGGAGCAGTATGGAACACTGTATAAAAAATTGCTCTCCGACAAGTATCAAGATCAGgatgAACAGACATTCAGTAAAGTCCAGGTCTGCTGGGAGTGTCACTCGGTATTAAGGAATGTGGACAGGTTCCAGAGGAAAGCTAGAACGGCACACGACACGTTACAATCGCAACAGgataaaataaaaaagccagTAGAATGTCTGTCACATCTATCGATATTTCACAAGAGTAGCTACGATGAAGTAATTGAATATGAAACAGTTGATAACGAGCAGGATATAAAATTAGAacagttatttaacataaataaagttataaaggAAGAAACAAATGACGGCCATTACAatgatgaagatttatttgatACAGATTGCACAGATAACATAATGAAAATAACAGATAATATATCGAATAGTGTAGATAAtcaagaaacaaaattaaaaaagaaaaggaaaagAATAAAATCGGTCATCAATACCAGTCAAGTTGTTAATGACCAAGTTGAAAATGACATTTATTACGATGAAAAAGATTTATTCGATACAGATTGCACAGATAACATAATGGAAATAACAGATGATATATCGAATAGTGTAGATAATCAagaaacgaaattaaaaaagaaaaggaaaagAATAAAATCGGTCATCAATACCAGTCAAGTTGTTAATGACCAAGTTGAAAATGACACTTATTACGATGAAAAAGATTTATTTGATACAGATTGCACAGATAACATAATGGAAATAACAGATGATATATCGAATAGTGTAGATAAtcaagaaacaaaattaaaaaagaaaaggaaaagTTTAAAATCGGTTATAAAAACAACTCAAGTTGTTTATAATGAAGCTGAAAATGACAGTCATATGAGTAGAGTGCAATTAAATATTAAGGAAATTGAAAAATTGTCGAGAAATAAGAGAGGAAACATATCTGATATGTCATATCGTGCTAATGTTGCCGTTAAAAATATTCTGTCAAATAAAAAGAAGGATACACAAATGTGCAGTatcatGCCTTCTCCAAAGAAACCAACTCGTGAAGAGCGTCTAGAAAAAAAGCGTCAGGCAGAACGATTGAGATACCAACGCATAAAAAATGATCCCGAAAAGAATTCTCAACAGAAGGAAAAGgataagaaaaaatatgaaaGACAAAAAGAGAAAGGACTTATTAAGACTGTAAACCAAATGACACCCACAGAAAAACGAAAAGCTAGAAAAATATGGAGAGAAAAGGCAAAACTACGGAGACGACGTTTAGCCCTTCAAAATATTAGAAATGCTCCTGCTACTCAACCTAGTTCggattttcctaccatgaataCAAAATCGCGCTCGAATGTTGATAATGTATATGGTCCTGAAAATGAATCTGACGAAAAACcactaataaaatatagaaaggAAAGCAGCTTAGAGCATCTTCGTCTTGTTCTCAGCCAGTTTCCGAGGAAGCATACCAGGGTTGAAGAAGATGATGAGTCAACCACAACTTGTACGGAATGTTCAAAAATCGTACCGGACAGAACATCAATGATCGAACACTGGAACGACCACACAATAACTATGTACAAATGTAATTACTGCACGCACTACGTTAACGACAGTGACgaaatattaaatcatttacAACAGAAACACACAACAATTTACACGTGTAAATGTGGTGCAGAATTCAGAGGTTTACGTGATTACTTCAAACACAATAAGtatttacataatacatatgATTGTGACATTTGCAAGAGGAGATTCAAGTCTAAAACGAATATTGAAAATCATATGCTGAGAAAACATCTCCCATCAAAATGTACGATATGTCAACGTAACTACAGCAATTATAAGATGCTAATGAGCCACTTCTACGTGTATCATCCGGAATTGAAGAGAGTTAACGAGAGGCCGTACTGTGTTGAATGTGATATGCGTTTCGAGAATGACTACCTGTATAAACGCCACTTGAGATCAGCGGTTGCTCATCGGCCTAAGAGAGACGTCAAGGTCCCGTGTCCTGATTGCGGTAAAATATTCAGTCGGAAGACATACATGACGAATCATTACAACTTGGTCCACGTGCGACAGTCGAAGCATTACTGTGAGATTTGTGATAAGTACTTTATAACGGGCTACGCGATCCGGACACACAAGAAATTCGTTCACGAAAAACGAGAGAAACCAAAGGACAAGATATGTGAAATATGTGGTAGAGGGTTTTTTacgaACCGTGTGTTAATGAACCACAGACGGACGCACACGGGCGAGAGGCCGTTCATGTGTACCTACTGTCCCGCCGCTTTCGCGCAGAGGTCAGCCATGAAGACGCACGAGCGGACACAACACAAGAACTACTTACGAACTGATATAAAATTGTga
- Protein Sequence
- MDVDMNRGVEIKEEITVEENPYLCRICLSVGRKMFPLEQYGTLYKKLLSDKYQDQDEQTFSKVQVCWECHSVLRNVDRFQRKARTAHDTLQSQQDKIKKPVECLSHLSIFHKSSYDEVIEYETVDNEQDIKLEQLFNINKVIKEETNDGHYNDEDLFDTDCTDNIMKITDNISNSVDNQETKLKKKRKRIKSVINTSQVVNDQVENDIYYDEKDLFDTDCTDNIMEITDDISNSVDNQETKLKKKRKRIKSVINTSQVVNDQVENDTYYDEKDLFDTDCTDNIMEITDDISNSVDNQETKLKKKRKSLKSVIKTTQVVYNEAENDSHMSRVQLNIKEIEKLSRNKRGNISDMSYRANVAVKNILSNKKKDTQMCSIMPSPKKPTREERLEKKRQAERLRYQRIKNDPEKNSQQKEKDKKKYERQKEKGLIKTVNQMTPTEKRKARKIWREKAKLRRRRLALQNIRNAPATQPSSDFPTMNTKSRSNVDNVYGPENESDEKPLIKYRKESSLEHLRLVLSQFPRKHTRVEEDDESTTTCTECSKIVPDRTSMIEHWNDHTITMYKCNYCTHYVNDSDEILNHLQQKHTTIYTCKCGAEFRGLRDYFKHNKYLHNTYDCDICKRRFKSKTNIENHMLRKHLPSKCTICQRNYSNYKMLMSHFYVYHPELKRVNERPYCVECDMRFENDYLYKRHLRSAVAHRPKRDVKVPCPDCGKIFSRKTYMTNHYNLVHVRQSKHYCEICDKYFITGYAIRTHKKFVHEKREKPKDKICEICGRGFFTNRVLMNHRRTHTGERPFMCTYCPAAFAQRSAMKTHERTQHKNYLRTDIKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -