Basic Information

Insect: Euphydryas editha
Gene Symbol: -
Assembly: GCA_036937285.1
Location: JAUPFZ010000023.1:8313430-8328761[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2e-05 0.0018 20.0 2.9 1 23 257 279 257 279 0.98

2 11 0.11 16 7.6 2.4 1 23 287 310 287 310 0.93

3 11 0.00011 0.016 17.0 1.6 1 23 407 429 407 429 0.99

4 11 2 2.9e+02 3.5 4.1 2 23 438 460 437 460 0.95

5 11 0.013 1.9 10.4 1.9 1 23 464 486 464 486 0.98

6 11 0.00055 0.079 14.8 2.0 1 23 491 514 491 514 0.97

7 11 0.064 9.2 8.3 1.4 3 23 520 541 519 541 0.94

8 11 0.073 11 8.1 0.0 2 20 560 578 559 580 0.93

9 11 5.4e-06 0.00077 21.1 1.1 1 23 650 672 650 672 0.98

10 11 0.00041 0.059 15.2 1.9 1 23 678 700 678 700 0.96

11 11 1.7e-05 0.0024 19.5 2.9 1 23 706 729 706 729 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2e-05	0.0018	20.0	2.9	1	23	257	279	257	279	0.98
2	11	0.11	16	7.6	2.4	1	23	287	310	287	310	0.93
3	11	0.00011	0.016	17.0	1.6	1	23	407	429	407	429	0.99
4	11	2	2.9e+02	3.5	4.1	2	23	438	460	437	460	0.95
5	11	0.013	1.9	10.4	1.9	1	23	464	486	464	486	0.98
6	11	0.00055	0.079	14.8	2.0	1	23	491	514	491	514	0.97
7	11	0.064	9.2	8.3	1.4	3	23	520	541	519	541	0.94
8	11	0.073	11	8.1	0.0	2	20	560	578	559	580	0.93
9	11	5.4e-06	0.00077	21.1	1.1	1	23	650	672	650	672	0.98
10	11	0.00041	0.059	15.2	1.9	1	23	678	700	678	700	0.96
11	11	1.7e-05	0.0024	19.5	2.9	1	23	706	729	706	729	0.98

Sequence Information

Coding Sequence: ATGTTTGCCTTAAAAGCATGCACTGTGTGCTTGAAAACTAACGTGAAAGTGTTCAATATGAACACAGCACAATTGAGACATGAATATAATTTAGTGTCTGGCTTAATGactCGCAGTCAAAATGGTTTACCTGAGTACTTGTGCTATCAATGTGTGGCATATGtgaaaaattttataagatTCCGTGACAAATGCCAACGAACATATTATGCCTTACGAGAAATTCTAGATCGAGATAAAAAGATAACCCAGTCAATTATCGAAGAGCTAGACTCAAATGTGCTGAATATTGAACCTACTCTGTCCTATCTAGTTGCAGATCACCCTAAAACTAAGTatgaaaatgttaaatataaaaattcaaaacagAATTTTGTTAATGTAAAACAACAAGAAAATATAACTGTTGTTCATTATTGTACTACTTCTgatgatttaatatttgaagtgcCTAAGAAAAAACCTAGACTTTGGGTGGATTtagaagaaaatataaaacaagaagAAGATCCCATAGTAAAAGATTTTGAAACATTCAATGCAGAAAGCACAGATCTTGACTCTAAACAAAATGAGGACAGTTTCTTTGACAGTAACTTTGATGATTTCGATGAACCACAAAATGAGattgataataatgataaaattgatATGCAAGTTGATACTAGTGGCATGAATTTAGAGGAGGAGTATGCTACAATATTACCTATATCTATGAAAGAGGCTAGGGCAGTCGTGGATGTGTATAAGCTACTCGCACAAGGCAAGTTTTCATGCAAAGTGTGTGGAAAAACTTATAACAGTGAATGTCGACTGACAGCACATATGAGAATGCATGAAATGAGTATAAATGGTACCTTCTTCTGTACTTTgtgcaaatattattatagatcagaacttttattaaaaagtcaTATGACAGAGAAAcatttatacaagtatttatgTAAGAAGTGTCCTGAGGTGAATTTTGATagACATTTAGCTAAAAGACATTATTACTGGGGTCATTTCCAAGAAATTTCCAACAAGGGATCCAGTTGGTCACGTACAAGCAAAGTCACTAAGGGTGGTAGAAAGAATAAGTCTGCTATACGCCGGCTAGAAACTAAAACAGTGGTACCACATGACTATCCGATACAAACTGCTATAAGTCAGGATGAACAATATGCTTTGGTGCGAGATAGACAGAAGACCAAAAACTACATTGATTCACCGTTTAAATGTGAATATTGTTTTAAAGGCTTCCGGGTTGCCACAACATTCGAggcacatttaaaaaaacatgatCCTGCTTTATCAGGAAAATTACAATGTGATGCGTGCAAAATATGCTATCCAAGTACTGGGAAGATGTACAAACATATGACTAGATGTCACATCTTCAAATATTCATGTCAGATGTGTGGGTACATATGCTTTAATAGGGGTCAAGCTAAAGTTCATTATAGGTGGCATAAAAAAGTTACATATCCATGTCCACATTGTAAAAAGGAGTTTTCtaAGGAGTCAACGAAGTTAGGCCACATTCGTAAGATGCACCCATCGACCAACATTTGCAACTTGTGTGGACACAGCTTTGTGAGTGTCATCGGTCTACACATACACAAACTGAAGACACATAGCAAGGAGgaAATGGAAGAGAACGAAGATATAGTGGATACATCGAATCCGCTGTACTGCGCGGAGTGTGGGGTTCAGTTCCGAGATGACGACGCATTCACCACTCATCTCGGTTCTTCCAACAAACATGCTGACACTAATCGCGCGATTATGAAGCTGGGGGTGGAGGAGGGCGTGGGTACGCGCCTCACGGACAAGGGCGTCGTCAACATGGGGCGCGCCACCTCCTCGCACTGCGAAATCTGCAACAAATACCTTTTGAACGACACGCAAGCGGTGCGGCATTATGACGCGGAGCACCCCGGAGCGCCGTACCTTAAGCGCTACATGTGCGACATCTGCGGACACAAGACTAGGCAATACGCAAACCTCGTAGTACACATGCGCACACATACTCAAGAGAAGCCGTACTCGTGTCCGCACTGCGACCGACGCTTCAGCATGCAGAACAATCGCGATAGACATCTTGTTGTGCACACGGGCGAGAAGAAGTACCAGTGTCCGCACTGCAACCGGCGCTTCTCGCAGAAGAACACGGTGAAGCTGCACGTGCAGACGGTGCACCTGAAGATCCCCTACCCGCCCTGGAACAAGAAGAACCGCAAGCGGCGCCGCGACCCCGACTCGCCCCCGCCGCCGCCCCCGCCCCCGCCGCAGCCCTGCAAGCTGCCGGACGCGCGCCCCGACTACCTCAGCGCCTACATCGACACCACCAGGGTCTGCGGCACCAACTAG
Protein Sequence: MFALKACTVCLKTNVKVFNMNTAQLRHEYNLVSGLMTRSQNGLPEYLCYQCVAYVKNFIRFRDKCQRTYYALREILDRDKKITQSIIEELDSNVLNIEPTLSYLVADHPKTKYENVKYKNSKQNFVNVKQQENITVVHYCTTSDDLIFEVPKKKPRLWVDLEENIKQEEDPIVKDFETFNAESTDLDSKQNEDSFFDSNFDDFDEPQNEIDNNDKIDMQVDTSGMNLEEEYATILPISMKEARAVVDVYKLLAQGKFSCKVCGKTYNSECRLTAHMRMHEMSINGTFFCTLCKYYYRSELLLKSHMTEKHLYKYLCKKCPEVNFDRHLAKRHYYWGHFQEISNKGSSWSRTSKVTKGGRKNKSAIRRLETKTVVPHDYPIQTAISQDEQYALVRDRQKTKNYIDSPFKCEYCFKGFRVATTFEAHLKKHDPALSGKLQCDACKICYPSTGKMYKHMTRCHIFKYSCQMCGYICFNRGQAKVHYRWHKKVTYPCPHCKKEFSKESTKLGHIRKMHPSTNICNLCGHSFVSVIGLHIHKLKTHSKEEMEENEDIVDTSNPLYCAECGVQFRDDDAFTTHLGSSNKHADTNRAIMKLGVEEGVGTRLTDKGVVNMGRATSSHCEICNKYLLNDTQAVRHYDAEHPGAPYLKRYMCDICGHKTRQYANLVVHMRTHTQEKPYSCPHCDRRFSMQNNRDRHLVVHTGEKKYQCPHCNRRFSQKNTVKLHVQTVHLKIPYPPWNKKNRKRRRDPDSPPPPPPPPPQPCKLPDARPDYLSAYIDTTRVCGTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986621;
90% Identity: iTF_00986621;
80% Identity: -