Eedi041142.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000031.1:10201088-10204793[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6 8.7e+02 2.1 0.7 3 23 201 222 200 222 0.92 2 9 0.03 4.3 9.3 0.6 2 23 258 278 257 278 0.96 3 9 0.0029 0.41 12.5 0.4 2 20 285 303 284 304 0.95 4 9 3.3e-06 0.00047 21.8 1.1 2 23 329 350 328 350 0.97 5 9 1.5e-06 0.00021 22.9 0.7 1 23 358 380 358 380 0.98 6 9 0.0033 0.47 12.3 1.5 1 23 386 408 386 408 0.96 7 9 1.5e-05 0.0022 19.7 2.2 1 23 414 436 414 436 0.97 8 9 0.0044 0.63 11.9 3.9 1 23 442 464 442 464 0.97 9 9 7.2e-06 0.001 20.7 3.0 1 23 470 493 470 493 0.98
Sequence Information
- Coding Sequence
- ATGGAAAATTCGAAGAATCTTTATTGCCGGTTTTGTGCGGAACAAAAGAGTGCCGAAAAAATGTTAAATCTGTTAAATGACGAAAAGAAATTAGACGAAATTTTagtaaagttaaattttctaaacgCACTTTATGTCGAAGTATCTAACAGGGATACCTTGCCTAAAACGAtgtgttttgtttgttacgacTCATTAAACATGGCTTATGATTTCCTGGACCGTGTTAAGAAAGCGCAAGATGTTTTATCAACCATATTTCCTGATAATGAGAAAAACGATTTTTCCGACGACGATAGAGTGATCGGTTTTGACGAAATGTTGAACACAGACGTAGAAGACTCAAATATAATCAAACAGGAGGACACAGACGTAAAGAGACAGCCAGAATCATGTTTAGAAGTCAAAAAAGAACCAAAAGATGAGATTGACGGAGCCGATACAAGTCAAGACAGTCATGTTTACGATCAAACTGTAAACGTACAATATATACTAGACGCAGCTATGTGTAATGTACCTTTAGAAGGAACTTTATATGCTAAAGAAGTGAAAGACGGTAGTAAAAGATCAGTGTCAACGTGGAAAGAGTACCCGTGGTTGTGTGCACACTGTAATATAGAGTTTCTTGATATTGTCACTCTACGGTTACACTCGAAAATGACACACGGAAAGTGCAATGCATATGTCTGTATAGACTGTGATAACTACAGCGGCGGTGACTTTGATTTCTTTATTAAACATGTAAAATTACATAGGAAGAGATTGagAAAGAGATGCCACTATTGCGATGAAGTAGTGAACGAAGATTTACTGTCAACCCACATACAGGACCATTTCCAAAAGAATCAAGTATCATGCCACATGTGCGGTGAAATACTAAAGAACCACGAATCACTCCAGAAGCACCTCGGTGAATACAATACGacgaaaattaaaagaaaaccaCGCAGGAAACGCGGTACGCCATTAACGATAGAAGATTTAACTTGCAAATTGTGTAAAAAGGTATACAAAAACCCGAACAGCTTACGCGATCATATGAAAATACACACCAACGATAGAAAACGGAATTACACCTGTGATAGATGTGGCAAGATGTTTTATAACAAGGGAACGCTGACATCGCACATCATGGCGCACGACCAAGTCCGTCCACACATATGTAGGATAtgcaataaatcatttttattccCAAACATGTTAAGGAGACATGTTGAAATGCATTCCGGTATAAAACCGTTTTCATGCGAGCAATGTGGAAGATGTTTCCGACTACAATACCAGTTAAATGCACACAAGATTATCCACACAGATTCAATGCCACACGTCTGCCAATATTGCAATAAGGCCTTTCGTTTCAAACAAATTCTAAAAAATCACGAGAGACAACATACTGGCGCGAAGCCATATTCGTGTAAGAGTTGCAGTATGGAATTCACGAACTGGTCGAATTACAACAAGCACATGAAAAGAAGACATGGTCTGGACACGTCGAAGAAGAAGATTACGCCAGAAGGTGTGTTTCCGATAAACCCGCAGACCGGTAAACTCATGCAGTTCAATGATGCGGGTACCGAAGAGTGGAAGTCGCAAATTATGATACCCGGTAAACGAGGAAAGAAAAAAGTTATCAAGAAGGAAGAGattatttag
- Protein Sequence
- MENSKNLYCRFCAEQKSAEKMLNLLNDEKKLDEILVKLNFLNALYVEVSNRDTLPKTMCFVCYDSLNMAYDFLDRVKKAQDVLSTIFPDNEKNDFSDDDRVIGFDEMLNTDVEDSNIIKQEDTDVKRQPESCLEVKKEPKDEIDGADTSQDSHVYDQTVNVQYILDAAMCNVPLEGTLYAKEVKDGSKRSVSTWKEYPWLCAHCNIEFLDIVTLRLHSKMTHGKCNAYVCIDCDNYSGGDFDFFIKHVKLHRKRLRKRCHYCDEVVNEDLLSTHIQDHFQKNQVSCHMCGEILKNHESLQKHLGEYNTTKIKRKPRRKRGTPLTIEDLTCKLCKKVYKNPNSLRDHMKIHTNDRKRNYTCDRCGKMFYNKGTLTSHIMAHDQVRPHICRICNKSFLFPNMLRRHVEMHSGIKPFSCEQCGRCFRLQYQLNAHKIIHTDSMPHVCQYCNKAFRFKQILKNHERQHTGAKPYSCKSCSMEFTNWSNYNKHMKRRHGLDTSKKKITPEGVFPINPQTGKLMQFNDAGTEEWKSQIMIPGKRGKKKVIKKEEII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985451; iTF_00843790; iTF_00825020; iTF_01078493; iTF_01080997; iTF_01506640; iTF_01508339; iTF_01507511; iTF_01080184; iTF_01079328; iTF_00986595; iTF_00796787;
- 90% Identity
- iTF_00985451;
- 80% Identity
- -