Eedi008504.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000006.1:19359587-19371652[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.03 4.2 9.3 2.3 2 23 102 124 101 124 0.91 2 20 0.0061 0.88 11.5 0.0 1 23 130 152 130 152 0.96 3 20 0.014 2 10.4 0.2 1 23 161 184 161 184 0.92 4 20 6.3e-06 0.0009 20.9 0.8 1 23 189 211 189 211 0.98 5 20 1.2e-05 0.0017 20.0 1.5 1 23 217 239 217 239 0.97 6 20 2e-05 0.0029 19.3 2.9 1 23 245 267 245 267 0.98 7 20 4e-07 5.7e-05 24.7 0.5 1 23 273 295 273 295 0.98 8 20 0.003 0.43 12.5 2.9 1 23 301 323 301 323 0.98 9 20 0.38 54 5.8 2.0 5 23 352 370 351 370 0.96 10 20 0.38 54 5.8 2.0 5 23 386 404 385 404 0.96 11 20 0.38 54 5.8 2.0 5 23 420 438 419 438 0.96 12 20 0.38 54 5.8 2.0 5 23 467 485 466 485 0.96 13 20 0.38 54 5.8 2.0 5 23 514 532 513 532 0.96 14 20 0.38 54 5.8 2.0 5 23 561 579 560 579 0.96 15 20 0.38 54 5.8 2.0 5 23 608 626 607 626 0.96 16 20 0.38 54 5.8 2.0 5 23 655 673 654 673 0.96 17 20 0.38 54 5.8 2.0 5 23 702 720 701 720 0.96 18 20 0.38 54 5.8 2.0 5 23 749 767 748 767 0.96 19 20 0.38 54 5.8 2.0 5 23 796 814 795 814 0.96 20 20 0.38 54 5.8 2.0 5 23 843 861 842 861 0.96
Sequence Information
- Coding Sequence
- ATGGGAAGAGCAGGGTCACTAGAGACAGCTCCACCTGATTTTGAAATAGTTACAATACCAGAAAACAACAACACAACTCCAACAGACAAAAAAGACGCAAATGTAGAAACATCGGAGGATCCGCAAGCACTGCCTGACTTGAGCGATGCGACCGAATCTAAGGTAGAAACTGTAGATATTGTCGAAGAAGTAGTGGATGTCGTTGATGATAATGACAATGGGAACAACGAGAAAATTGTTGtttcaGACAGTGCTAGTGAAGATGCCAATGATGAAGTACAAACAGACAAAGGGAAAAAATTGAAGTGCAATCACTGTGATAAATTATTCAGTAATAGACAGAGCAAGTCATTACATGTTAAGGCTGTACACCTCGGCGTGAAGTCGTATGCTTGTACGGAATGCGAGGCACGCTTCGCTTACCCGCAGTCGTTGGCAGTACACCGGGTCTCGCATCGCCGATTCCGTCCCACCAGTGGATACGCCTGTGATCTTTGTGGAAAGGTGCTGAACCACCCGTCGTCCGTGGTGTACCACAAGCAGGCGGAGCACGCGGCGCAGCGCTACGTGTGCGGCGCGTGCGGCAAGCCCTTCCGCCACAAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGGCGCGCCCCTTCACTTGCAAGACGTGCAATGCGACGTTTAAGACCAAAGCGAACTTGCTCAATCACCAACTTCTACATTCTGGCATCAAAAAGTTCTCGTGCGATATTTGTAAACAGAAATTCGCGCACAAAACGAGTCTCACGTTGCATATGAGGTGGCACACTGGCTTGAAGCCTTTTTCGTGCGACGTGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACTCGCGTATCCACACCGGCGAGAAGCCCTACCAGTGCGCGCTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGCCCGTGCACGACAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGCCCGTGCACGACAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGGTGCGCACATAGTACACAGTACATCGTACACCCACGCAGGCGAGAAGCCCTACCAGTGCGCGTGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCAGGCCCGCGCACGACAGAATCGCGGCAATGCGACGAGAAGATATCAACATCCGGCGCCGGCGTATGCTAGCGAGGCGGAACATCCAGCAAACTCAGAAGCAAATCAGTCTGCTCGTAAACGATAAGAACCAACATGCGGCGCAGATACAACTGCAGCAAATGCAGGTTCAGCAGGTGCAGATGCAACAGGTGCAGATTCAGCACCCGGTTGTGGAGAAGTTAGAGTTGGACGACGCGGACACGGAGGAGAGAGTCATATACGTGGCGTATGAAGCGGACGACTCTGACGCGACTGCATTCCACATACTTGACCCAGAACAGGAGGACATAGAAGAGAACAAGGCACTGAGCACGTGCGAGCTGTACTCGGGTGCGTCGCTGCTGGTGCCGCAGCTGCAGCCGGCAGGCGGCGACGGGGAGGAGGAGGAGGAGCCGCTGCAGGAAGACGACCTGCAGGAACAGCTGGTGCTGAAGAGTGAAAACATTGCAGTAACGGACGAGCAAGGAAACCCTCTACACTTTACAATGCAAGACGGTACAAAACTTGCGATCACATCTATCGACGGGGAAACATTGCAGGTAATTACACAGGATGGACAAACTATACCTGTTGAGATTAACGGCTTCAATGAGGAAGAGGAGGCCGCGAGTGCGGACGCAGCACAGCAGGCGGACGTCACTCACTACTACACCATCGTTTAG
- Protein Sequence
- MGRAGSLETAPPDFEIVTIPENNNTTPTDKKDANVETSEDPQALPDLSDATESKVETVDIVEEVVDVVDDNDNGNNEKIVVSDSASEDANDEVQTDKGKKLKCNHCDKLFSNRQSKSLHVKAVHLGVKSYACTECEARFAYPQSLAVHRVSHRRFRPTSGYACDLCGKVLNHPSSVVYHKQAEHAAQRYVCGACGKPFRHKQLLQRHQLVHSQARPFTCKTCNATFKTKANLLNHQLLHSGIKKFSCDICKQKFAHKTSLTLHMRWHTGLKPFSCDVCGKSFSQKGNLSEHSRIHTGEKPYQCALCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPVHDRREALPVRVCPRRFTTSSQHRLHARRHARRPVHDRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRCAHSTQYIVHPRRREALPVRVCPRRFTTSSQHRLHARRHARRPAHDRIAAMRREDINIRRRRMLARRNIQQTQKQISLLVNDKNQHAAQIQLQQMQVQQVQMQQVQIQHPVVEKLELDDADTEERVIYVAYEADDSDATAFHILDPEQEDIEENKALSTCELYSGASLLVPQLQPAGGDGEEEEEPLQEDDLQEQLVLKSENIAVTDEQGNPLHFTMQDGTKLAITSIDGETLQVITQDGQTIPVEINGFNEEEEAASADAAQQADVTHYYTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -