Eedi034967.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000027.1:672747-685853[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 52 2.3 3.3e+02 3.4 0.1 1 12 34 45 34 48 0.87 2 52 2.3 3.3e+02 3.4 0.1 1 12 64 75 64 78 0.87 3 52 2.3 3.3e+02 3.4 0.1 1 12 94 105 94 108 0.87 4 52 2.3 3.3e+02 3.4 0.1 1 12 124 135 124 138 0.87 5 52 2.3 3.3e+02 3.4 0.1 1 12 154 165 154 168 0.87 6 52 2.3 3.3e+02 3.4 0.1 1 12 184 195 184 198 0.87 7 52 2.3 3.3e+02 3.4 0.1 1 12 214 225 214 228 0.87 8 52 2.3 3.3e+02 3.4 0.1 1 12 244 255 244 258 0.87 9 52 2.3 3.3e+02 3.4 0.1 1 12 274 285 274 288 0.87 10 52 2.3 3.3e+02 3.4 0.1 1 12 304 315 304 318 0.87 11 52 2.3 3.3e+02 3.4 0.1 1 12 334 345 334 348 0.87 12 52 2.3 3.3e+02 3.4 0.1 1 12 364 375 364 378 0.87 13 52 2.3 3.3e+02 3.4 0.1 1 12 394 405 394 408 0.87 14 52 2.3 3.3e+02 3.4 0.1 1 12 424 435 424 438 0.87 15 52 2.3 3.3e+02 3.4 0.1 1 12 454 465 454 468 0.87 16 52 2.3 3.3e+02 3.4 0.1 1 12 484 495 484 498 0.87 17 52 2.3 3.3e+02 3.4 0.1 1 12 514 525 514 528 0.87 18 52 2.3 3.3e+02 3.4 0.1 1 12 544 555 544 558 0.87 19 52 2.3 3.3e+02 3.4 0.1 1 12 574 585 574 588 0.87 20 52 2.3 3.3e+02 3.4 0.1 1 12 604 615 604 618 0.87 21 52 2.3 3.3e+02 3.4 0.1 1 12 634 645 634 648 0.87 22 52 3.2 4.5e+02 2.9 0.1 1 12 664 675 664 678 0.87 23 52 2.3 3.3e+02 3.4 0.1 1 12 694 705 694 708 0.87 24 52 2.3 3.3e+02 3.4 0.1 1 12 724 735 724 738 0.87 25 52 2.3 3.3e+02 3.4 0.1 1 12 754 765 754 768 0.87 26 52 2.3 3.3e+02 3.4 0.1 1 12 784 795 784 798 0.87 27 52 2.3 3.3e+02 3.4 0.1 1 12 814 825 814 828 0.87 28 52 2.3 3.3e+02 3.4 0.1 1 12 844 855 844 858 0.87 29 52 2.3 3.3e+02 3.4 0.1 1 12 874 885 874 888 0.87 30 52 2.3 3.3e+02 3.4 0.1 1 12 904 915 904 918 0.87 31 52 2.3 3.3e+02 3.4 0.1 1 12 934 945 934 948 0.87 32 52 2.3 3.3e+02 3.4 0.1 1 12 964 975 964 978 0.87 33 52 2.3 3.3e+02 3.4 0.1 1 12 994 1005 994 1008 0.87 34 52 2.3 3.3e+02 3.4 0.1 1 12 1024 1035 1024 1038 0.87 35 52 2.3 3.3e+02 3.4 0.1 1 12 1054 1065 1054 1068 0.87 36 52 2.3 3.3e+02 3.4 0.1 1 12 1084 1095 1084 1098 0.87 37 52 2.3 3.3e+02 3.4 0.1 1 12 1114 1125 1114 1128 0.87 38 52 2.3 3.3e+02 3.4 0.1 1 12 1144 1155 1144 1158 0.87 39 52 2.3 3.3e+02 3.4 0.1 1 12 1174 1185 1174 1188 0.87 40 52 2.3 3.3e+02 3.4 0.1 1 12 1204 1215 1204 1218 0.87 41 52 2.3 3.3e+02 3.4 0.1 1 12 1234 1245 1234 1248 0.87 42 52 2.3 3.3e+02 3.4 0.1 1 12 1264 1275 1264 1278 0.87 43 52 2.3 3.3e+02 3.4 0.1 1 12 1294 1305 1294 1308 0.87 44 52 2.3 3.3e+02 3.4 0.1 1 12 1324 1335 1324 1338 0.87 45 52 2.3 3.3e+02 3.4 0.1 1 12 1354 1365 1354 1368 0.87 46 52 2.3 3.3e+02 3.4 0.1 1 12 1384 1395 1384 1398 0.87 47 52 0.015 2.2 10.2 0.7 1 23 1414 1437 1414 1437 0.96 48 52 5.7e-05 0.0082 17.9 1.3 2 23 1448 1469 1447 1469 0.97 49 52 0.00097 0.14 14.0 1.2 1 23 1475 1497 1475 1497 0.95 50 52 0.00016 0.023 16.4 2.4 2 23 1504 1525 1504 1525 0.97 51 52 1.5e-06 0.00021 22.9 1.5 1 23 1531 1553 1531 1553 0.98 52 52 0.0045 0.65 11.9 0.1 1 22 1559 1580 1559 1580 0.96
Sequence Information
- Coding Sequence
- ATGAGTCGGTTGCTAAGCACCGTCAGTTGTCTCGCAGGCCTGACGCACAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGATgaggcgcgcgcgcccgcgccgagctacgtgtgcgacgtgtgccccgagaagttcgtctacatgagcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCAGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACATGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGCGCGCACGAGCTGCGGCGCGAGGAcgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGcgcgcacgagctgcggcgcgaggacgaggcgcgcgcgcccgcgccgagcTACGTGTGCGACGTGTGCCCCGAGAAGTTCGTCTACATGAGGTGCCTGCTGGCGCACCGCACGCGCGCGCACCCGGAGGCGGCGGGGCGCGCGCTGTCGCTGCGCTGCGGCGTGTGCGCGCGCAACTTCGCGCACTCCAACTCGCTGCGGCGCCACATGCGCGTGCACTCGGGCGAACTCAACTTCCTGTGCAACGTGTGCGGCAAGGCGCTGTCGTCGCGCGAGCATCTCAAGTTCCACATCCGCATCCACACCGGCTACAAGCCGAACGTCTGCAAGACGTGTGGCAAGGGGTTCGCCAAGAAGTGCAACCTGAAGCTACACGAGCGAGTGCACTCGGGTGAGAAGCCGTACGTGTGCTCGCACTGCGGGAAGGCCTTCTCGCAGCGCTCGACGCTCGTCATACACGAGAGGTACCACAGCGGCGCGCGTCCGTTCTCGTGCTCGCtgtgcggtcgcgggttcgtggCGCGCGGCCTGCTCACCATGCACCTGAAGACCGCCTGCGTCGACCTGCCGCGCCAGCGCGCGCCGCCCCCGCCGCACCCCGCGCAGCAGCGCCCGCTCAAGTAA
- Protein Sequence
- MSRLLSTVSCLAGLTHSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELQREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYMCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMSAHELRREDEARAPAPSYVCDVCPEKFVYMRCLLAHRTRAHPEAAGRALSLRCGVCARNFAHSNSLRRHMRVHSGELNFLCNVCGKALSSREHLKFHIRIHTGYKPNVCKTCGKGFAKKCNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHSGARPFSCSLCGRGFVARGLLTMHLKTACVDLPRQRAPPPPHPAQQRPLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -