Eedi036402.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000029.1:1188937-1190319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.9e-05 0.0085 17.8 2.1 1 23 107 130 107 130 0.95 2 10 3.8e-05 0.0055 18.4 3.0 2 23 138 160 137 160 0.94 3 10 0.24 35 6.5 5.3 2 23 168 190 167 190 0.95 4 10 6.8e-06 0.00097 20.8 1.5 2 23 198 220 197 220 0.95 5 10 0.00032 0.045 15.5 4.6 1 23 227 250 227 250 0.96 6 10 0.0016 0.23 13.3 5.3 1 23 256 279 256 279 0.94 7 10 6e-05 0.0087 17.8 0.3 2 23 287 308 286 308 0.97 8 10 0.0018 0.26 13.2 1.0 2 23 316 338 315 338 0.96 9 10 0.00013 0.019 16.7 3.0 2 23 345 367 344 367 0.94 10 10 3.3e-05 0.0047 18.6 4.0 1 23 376 398 376 398 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAACCGGTTTACCAACCATCGCAGATGGAAGACGTGTATCCCCCTAAGATTGAGGGTCATTTTCTCGACACCCAGTCCCAGGAGCAACCACCGGCAGCGTCGGAAGACTATGCTGTGCCTAAGCAAGAATTAGCATACCCACCGCCGAGACCGGAAGACCAGATGATACCAAGACCAGGTCCAATGCCCAATCGTCCCCCTACTAAGTTCATTAGTGTCACTAGTTCTGCATTAACTGAAGAACAACGAGCGATGTATGAATCTGTTCTCTCAACGTGGAAACCAGTGATGTTCCCAAAGTCTATCAAACGCTACATATGCCAGAAATGCAACAAGGAATTCAAGAATTCTCAAAATCTTTATCTCCACACGACCAGAGTACATTCTTCCGAAGAATCAGCCGTTATGTGTGATATATGTGATAAAACCTTCAAGAATAAGCACTACTTATACATGCATCGAATGAATAAACACTATTCCGAATCAGAAAAATGTTACTGCCAATTTTGTCTCCAAGAGTTTAGGACGAGGCGAGCTCTACATATGCACGTTAAGCGCATACATCCAAACACATTGCCCGAAATAAAATGTCCGGAGTGTGGGAAAGAATTCCCTGTACCGTACAAGTTGAGACACCATATGGAAAATTGCCACAGACCTGCTGATGACAAATACAAGTGCCACATTTGTCAAAAGCTGTACAAAAGTCGcttaaatttgaataaacatCTCTATTCCCAGCATTCACAAGTCGAGAGACATCCGTGTGTGTTTTGTCCCATGACGTTCAAGTCAAGGCATCATATGAAACGCCACATTCTGAACATTCATCCACCGCTGGAATCGAAAGTGACTTGTCCGGAATGCTTGAAGGAATTCAAGAACGACCAGTACTTAAAAGAGCATATGCAAGTACACACGGCTTTCGATAAGAAGGTCAAATGCGAGTTGTGCGAAAAATTCTTTAACTCCGCCTTACGTCTGAAGAAACACAAGAAAATCGTGCACCCGAATAAGCCTAAATTACGTTGCGAGAAATGTGATAAGGAATTCGCGCATCCACACTACCTGAGTCGTCATAACAATTCCGTGCACGTCGAAGTCGATGAAAGCAATCAGCATGAATGCGACCAGTGCggaaagaaatttaaaataaagaaatatttaaacaatcatTTGCAGAGACACGAACAGCAACACTTGAAGCGTATATCCCAAATGGTGAAAACGGTCATGGATGAGGGAGAAGGCCCACCCAAGACCGTGAAGAAACAGACAAGACCTCGAAGAGCAAGGAAGGAAATCGAGTTCATTAAATGCGAACCGATCTCCAGTTCGGAATCTGACTCCGGCGATATGGATTCCGaatccgaataa
- Protein Sequence
- MEEPVYQPSQMEDVYPPKIEGHFLDTQSQEQPPAASEDYAVPKQELAYPPPRPEDQMIPRPGPMPNRPPTKFISVTSSALTEEQRAMYESVLSTWKPVMFPKSIKRYICQKCNKEFKNSQNLYLHTTRVHSSEESAVMCDICDKTFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHVKRIHPNTLPEIKCPECGKEFPVPYKLRHHMENCHRPADDKYKCHICQKLYKSRLNLNKHLYSQHSQVERHPCVFCPMTFKSRHHMKRHILNIHPPLESKVTCPECLKEFKNDQYLKEHMQVHTAFDKKVKCELCEKFFNSALRLKKHKKIVHPNKPKLRCEKCDKEFAHPHYLSRHNNSVHVEVDESNQHECDQCGKKFKIKKYLNNHLQRHEQQHLKRISQMVKTVMDEGEGPPKTVKKQTRPRRARKEIEFIKCEPISSSESDSGDMDSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265142;
- 90% Identity
- iTF_00986527;
- 80% Identity
- -