Eedi014284.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000010.1:17083323-17091898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.1 1.6e+02 4.4 0.1 3 23 115 135 113 135 0.96 2 23 0.027 3.9 9.4 0.0 2 23 139 161 138 161 0.95 3 23 0.032 4.6 9.2 0.3 2 23 400 422 399 422 0.96 4 23 0.046 6.6 8.7 0.1 1 20 430 449 430 451 0.95 5 23 0.0023 0.34 12.8 0.8 2 23 461 482 460 482 0.94 6 23 0.81 1.2e+02 4.8 0.7 1 23 498 521 498 521 0.91 7 23 0.0068 0.97 11.3 2.2 1 23 530 553 530 553 0.91 8 23 1 1.5e+02 4.5 0.4 2 20 631 649 630 653 0.79 9 23 1.1 1.6e+02 4.4 1.2 1 23 658 681 658 681 0.93 10 23 7.6e-05 0.011 17.5 1.8 1 23 687 709 687 709 0.96 11 23 9.4e-06 0.0014 20.3 0.8 1 23 716 738 716 738 0.98 12 23 0.00013 0.018 16.8 2.3 1 23 743 765 743 765 0.96 13 23 0.0041 0.59 12.0 0.7 1 21 771 791 771 791 0.93 14 23 0.0041 0.59 12.0 0.7 1 21 844 864 844 864 0.93 15 23 0.0041 0.59 12.0 0.7 1 21 917 937 917 937 0.93 16 23 0.0041 0.59 12.0 0.7 1 21 990 1010 990 1010 0.93 17 23 0.0041 0.59 12.0 0.7 1 21 1063 1083 1063 1083 0.93 18 23 0.0041 0.59 12.0 0.7 1 21 1145 1165 1145 1165 0.93 19 23 0.0041 0.59 12.0 0.7 1 21 1218 1238 1218 1238 0.93 20 23 0.0041 0.59 12.0 0.7 1 21 1291 1311 1291 1311 0.93 21 23 0.0041 0.59 12.0 0.7 1 21 1364 1384 1364 1384 0.93 22 23 0.0041 0.59 12.0 0.7 1 21 1407 1427 1407 1427 0.93 23 23 0.002 0.28 13.0 0.6 1 21 1489 1509 1489 1510 0.94
Sequence Information
- Coding Sequence
- ATGGCCTCTGATGAATCGGACGATGAACCTCTTTCCGTTTTAGCGGCTGCCAAGAAGAATAACTCTGAAAGTTTTGAAGAGCAATATTCTGAAAGCAATGATGACGAacctaaaaagaagaaaaagaaagaaacacCATTCAAAAAACTTGGtgtcacaataaaaataaagaaattaactaCTGTCGTTCCACCGGTGGTTATAGCCAGACCTTTAGATGTGTGGCTCTATTTAAAGGACTTAAATCCAACAGGCCCTTATAGCTGCTTGTTATGTACGGACTGGTTCATAAATAGGTCTAAAATGATCATGCACTATGCTTTGAATCATAAAAAGGATTTTTGTGGAATTTGCAGATACTTTGTACCTGACAGAGAGGCTTGGTGGAATCATCAGAAGTTTCATTCCCCATGGCCATGTTCTCAATGTGTCGAGACTTTTCCATCAGAATTAGCTTTACGGCAGCATCTGAATAGTGTGCACAATCTAGTTCATTGCCGTCTGTGTCATTTTCGAGTCAGTGCTGATGATCATTACAATACCCATTTATTCCAAAAACACAGTGTAACAAATGTGTCTTCTAAGAATGAAGAGCTGCTCTGGGAATTTGATTATGAAGGTGCAGAAAAATTTCTCTGCTTACTATGCTCAAAATCTGATAATGCAGTCAGTAATTTCTTTGGACATTACATGGGCTTACATCACTTTACTCTCAAATGTTTGACTACAATAGTAGCTGGAAAAGACACACCATTTTTAGTTAATGGAGCTGAAGTCACTGACCGTTTTATCAATGAACAACTCAAAGGGCATGTAAGGCTAGGGTATGTTGATTTGCAGCCAAAAGATTTTGTAAGCACAtctttcaatgaattattaacTGAGGAACCAGTTAATAAAGATGAGACATCACTAGTTGTGCTACCAGAAATTAAACAGGAGAATGTCAGTGATACAGAGGAAAAACAAGAAAGAGATAATGAAATGAGTGAAAAAGATGAACATAGTCAAAATGATGAAACAATAGATTATAAGGGTGAAGAAGATTTTGATATTACAATGACAGAGTTAGTTTTACttgaaaaatgttattataactATGTCAGTCAGACTCTTGTGGACATCAATTCAAACAAAATGCCTCAGATTTCACGTAtagattatgataaaaataaatgtgatgTTATAATGGATGTGGAATGTTCACTGTGTAAAACGAAAGTTGAAACTGCACTATCTTTGACTACacatatgaataaaattcaCAGTATTAAAACAGTACCCGTATATTCTTGTAGAGTTTGTGCTACAACATTTGATACTTATAATGAATTGGCAAACCATATAACCGAAGAACTGGTCGACTTTGATGATTTGTGGATATGTCAGTTTTGTGATAAAGAATTTAGTAATAGGGAAGAGACTAGAAAACATTTGACAGAACATTGGAGTGCATTGGATTATGATAATTGTTTCAGTCCACATTTAGGTTTTAAATGCAAGTACTGTCCAACGCTATTTTGGAATGAGACAGATAGAGAAACACATCAGATTAGAGtacattttaataagtataaagATCAGTTTTATAAATGTGAAACCTGCTCAAAAACATTTGGTGATAAGgTTTGGTTTATTCATCATTTTATAGAAAAGCACAATGATACAGAAGCTCCTGTGAGTCTTTATTTGCTAAAGTGCTGTTTATGCTGCATTGTTCTGCCAGGGGTTGACGAGATGAGAAGTCATTTTGAGCAGACTCATCCTGAACTTAGGAAACTGTACTGTTCCTTGGACTCTTGCATGTATAAACCTCTGAGCCATcgcaaatcatttaaattacatgtcAAGATGATTCACGGTCCAACATCGAAGTCTGATAAGCCAGTAACTTGCAACGTGTGTCAACGGGCGTTTGTGAGCGCGCGCGCCTGCAGCACGCACGTGGCTCAAGTGCACGGCCCGGGCAAGTTTAAATGCAAACTTTGTAGAGAAGTACTACAGACTAATGATGAGAGaAAACTTCATTATCTACTTCGTCATCCTGGTCGTCATCCATTTGAGTGTTCAGAGTGTGGCAAATCCTTTCAGTACAAGTCTTCTCTGTATATGCACAAGCAGGACCATATGCCCAATAAGCAGAACTACACTTGTAGTTACTGTGGAAAAATATTTGCGAAAAAAGACTCGTATAGAGAACACGTCCAGATCCACGAGGGCCCCCGGCACGCATGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGTGCGtgcgtgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGTGCGtgcgtgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGTGCGTGCGtgcgtgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGtgcgtgtctgtctgtctgtctgtcagctACTGAGCGCCGCCACACGGGCGAGCGCCCCTACCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGgagttga
- Protein Sequence
- MASDESDDEPLSVLAAAKKNNSESFEEQYSESNDDEPKKKKKKETPFKKLGVTIKIKKLTTVVPPVVIARPLDVWLYLKDLNPTGPYSCLLCTDWFINRSKMIMHYALNHKKDFCGICRYFVPDREAWWNHQKFHSPWPCSQCVETFPSELALRQHLNSVHNLVHCRLCHFRVSADDHYNTHLFQKHSVTNVSSKNEELLWEFDYEGAEKFLCLLCSKSDNAVSNFFGHYMGLHHFTLKCLTTIVAGKDTPFLVNGAEVTDRFINEQLKGHVRLGYVDLQPKDFVSTSFNELLTEEPVNKDETSLVVLPEIKQENVSDTEEKQERDNEMSEKDEHSQNDETIDYKGEEDFDITMTELVLLEKCYYNYVSQTLVDINSNKMPQISRIDYDKNKCDVIMDVECSLCKTKVETALSLTTHMNKIHSIKTVPVYSCRVCATTFDTYNELANHITEELVDFDDLWICQFCDKEFSNREETRKHLTEHWSALDYDNCFSPHLGFKCKYCPTLFWNETDRETHQIRVHFNKYKDQFYKCETCSKTFGDKVWFIHHFIEKHNDTEAPVSLYLLKCCLCCIVLPGVDEMRSHFEQTHPELRKLYCSLDSCMYKPLSHRKSFKLHVKMIHGPTSKSDKPVTCNVCQRAFVSARACSTHVAQVHGPGKFKCKLCREVLQTNDERKLHYLLRHPGRHPFECSECGKSFQYKSSLYMHKQDHMPNKQNYTCSYCGKIFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCPHCPRAFADKGACTAHTRCVRVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPGACLSVCLSATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVRVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPATERRHTGERPYRCPHCPRAFADKGACTAHTRCVRACLSVCLSATERRHTGERPYRCPHCPRAFADKGACTAHTRCVSVCLSVCQLLSAATRASAPTAARTARAPSPTRAPAPRTPGACLSVCLSATERRHTGERPYRCPHCPRAFADKGACTAHTRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -