Eedi034431.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- Champ1
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000026.1:11953408-11969368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00081 0.12 14.2 0.1 1 23 151 174 151 174 0.95 2 21 8.5 1.2e+03 1.6 1.3 3 23 201 222 199 222 0.90 3 21 0.0026 0.37 12.7 0.5 1 23 244 266 244 266 0.97 4 21 3.9e-05 0.0057 18.4 0.8 1 23 270 292 270 292 0.99 5 21 0.03 4.3 9.3 3.0 1 23 297 320 297 320 0.87 6 21 0.0046 0.66 11.9 1.5 3 23 329 350 327 350 0.93 7 21 0.23 33 6.5 0.4 1 23 358 381 358 381 0.89 8 21 0.00056 0.081 14.7 1.0 1 23 387 410 387 410 0.98 9 21 1.4e-05 0.002 19.8 1.2 1 23 416 438 416 438 0.98 10 21 9.4e-05 0.013 17.2 1.7 1 23 444 466 444 466 0.97 11 21 0.017 2.4 10.1 3.5 2 23 473 494 472 495 0.94 12 21 0.0031 0.45 12.4 0.0 1 23 569 592 569 592 0.95 13 21 8.5 1.2e+03 1.6 1.3 3 23 619 640 617 640 0.90 14 21 0.0047 0.68 11.8 0.8 1 23 663 685 663 685 0.97 15 21 3.4e-06 0.00048 21.7 0.7 1 23 689 711 689 711 0.99 16 21 0.011 1.5 10.7 3.2 1 23 716 739 716 739 0.92 17 21 0.0059 0.84 11.5 1.1 3 23 748 769 746 769 0.91 18 21 0.00056 0.081 14.7 1.0 1 23 776 799 776 799 0.98 19 21 1.1e-06 0.00015 23.3 1.5 1 23 805 827 805 827 0.98 20 21 0.001 0.15 13.9 4.0 1 23 833 855 833 855 0.97 21 21 0.0012 0.17 13.7 1.0 2 23 862 883 861 884 0.94
Sequence Information
- Coding Sequence
- ATGTCATTATTAATTCTATACCAGGAGGACACGAATGAGGAGAGGGTACTCGAGCCGCAGCCGGACGAAGAAACCGAAGTCGAATACTTGGAGGATGAGGACATTGATTACAAtgATAAAGAAGAATCGCCACCACCTCAACCGATGCCAAAGAAGAAAACCATTGCGAGAAGTTCATCAAGAAATAATAAGCAGATGGAATctcttgtaaataaaaaattatcttctttCGATACAGACAAGAAACAGATAAACACGAACGATTTAAAAATACCTAAGAATAGCAAGATCACAGTAAAAAATGGAAACTTGGAAATCAACTTTTCTTCGATGACACAGACCTCATATGACAAACGGACCTCACAAGACAAGCTTAAACATAAAGAAAACCTTCTGACCATTTTGAAATATTCAAATGCTATACCGTTTAAGAGTAAATCACATTTAGGATTCATATGTGGATACTGTGATGCAACGTATCCAGATCCTTTTGATCTACGAGTTCACACTCAGAATGATCATGAAAAAGAACGATTAGAATTCAAATCATCATTCGAAATGGCGAAATACACTGTGAAGTTGGATGTCACAAACCTATGTTGCTTATTGTGTTCTGAAAAAATGGATAATCTCAGCAAATTGAAGGACCATCTTGTTAAAATTCATTACAAGACCTTCTACGATGACATCAAAGATCACATTAAGGAGTTTAAGCTTAAAAAGGGAAAGTTTGATTGTGCTATTTGTCCATCCTCTTATGAGACTTTTATGATGTTGAACAAACACATGAATAAACATTATTCTAACTACACCTGCACAAAATGTGATGAATCATTCGCTATAAAAAGATCATTGTACGCTCATCAAAAGATTCATCAGGAAGGCACTTTCAAGTGTGACTTATGTGAGAAAGTATTCTCAAGCAGATGGAGAAAGAATCACCACGAAAAAGCTAAGCATTTAGGAGCTTCGAGTATCAGCAATTGTCCATACTGTGATGTCTCATTCCGAAGTTACCACCAGCGGAACCAGCATTTGGTCAAAGTTCATAACTGTAAAGCTCATTGTAAATTTAAGTGTCGGTTATGCGATGCCCCATTCCGAAGTGTCTACAAACGGAACGAGCATTTGGTCAACGTTCATAAATGTGAAGctcaatataaatgtaatatctGCAACAAGGCTTACTTACTGAAGTCTTTACTAATGAATCATATAAAGAGCTATCATTTAATGGAACGCAACTATCAGTGTACGGAGTGTGGATATCGGTTCATCGCTAAGAAATCATTGAAGTCACATATGGTAAAACACACTGGCGAGAGAAATTTCGCTTGCGAGATTTGTCACAAGTCGTTTACAAGGAGGGATATTATGACGGAACATATGAAAATACATGATCACGACAGCCGGCTCATTTGTGAAGTGTGTAGTATGACGTTTATACAAAAGTGCCGTTTAAGAAGTCATTTGTTGTCTCATCATGaTACAGACAAGAAACAGATAAACACGAAGGATTTAAAAATACCTAAGAATAGCAAGATCACAGTAAAAAATGGAAACTTGGAAATCAACTTTTCTTCGATGACACAGACCTCATATGACAAACGGACCTCACAAgacaagattaaaaataaagaaaacctTCTGACCATCTTGAAATATTCAAATGCTATACCGTTtaagaataaatcatatttaGGATTCATATGTGGATACTGTGATGCAACGTATCCAGATCCTTTGGATCTACGAGTTCACACTCAGAATGATCATGAAGAAGAACGATTGGAATTCAAATCATCATTCGAAATGGCGAAATACACTGTGAAGTTGGATGTCACAAACCTATGTTGCTTATTGTGTTCTGAAAAAATGGATAACCTCAGCAAATTGAAGGACCATCTTGTTAAAATTCATGACAAGACCATCTACGATGACATCAAAGATCACATTAAGGAGTTTAAGCTTAAAAAGGGAGATGTGTTTGACTGTGCAATGTGTCCATCCTCTTATGAgacttttaaaatgttaaaccAACATATGAATAAACATTATTCTAACTACACCTGCCCAAAATGTGATAAATCATTCGCTATAAAAAGATCATTGTACGCTCATCAAAAGATTCATCAGGAAGGCACTTTCAAGTGTGACTTATGTGAGAAAGTATTCTCAAGCAGATGGAAAAAGAATCACCACGAAAAAGCCAAGCATTTAGGAGCTTCGAGCATCAGCAATTGTCCATACTGTGATGTCTCATTCCGAAGTTACCACCAGCAGAACCAGCATTTGGTCAATGTTCATAATGTAACTAAATctcaatataaatgtaatatctGCAACAAGGCTTACTTACTGAAGTCTTTACTAATGAATCATATAAAGAGCTATCATTTAATGGAACGCAACTATCAGTGTACGGAGTGTGGATATCGGTTCATCGATAAGAAATCATTGAAGTCGCATATGGTAAAACACACTGGCGAGAGAAATTTCGCTTGCGAGGTTTGTCACAAGTCGTTTACAAGGAGGCACATTATGACGGAACATATGAAGATACATGATCACGACAGCCGGCTCATTTGTGAAGTGTGTAGTATGACGTTTATACAAAAGGGCCGTTTAAGAAGTCATTTGTTGTCTCATCATGGTATAAGTATATCATAG
- Protein Sequence
- MSLLILYQEDTNEERVLEPQPDEETEVEYLEDEDIDYNDKEESPPPQPMPKKKTIARSSSRNNKQMESLVNKKLSSFDTDKKQINTNDLKIPKNSKITVKNGNLEINFSSMTQTSYDKRTSQDKLKHKENLLTILKYSNAIPFKSKSHLGFICGYCDATYPDPFDLRVHTQNDHEKERLEFKSSFEMAKYTVKLDVTNLCCLLCSEKMDNLSKLKDHLVKIHYKTFYDDIKDHIKEFKLKKGKFDCAICPSSYETFMMLNKHMNKHYSNYTCTKCDESFAIKRSLYAHQKIHQEGTFKCDLCEKVFSSRWRKNHHEKAKHLGASSISNCPYCDVSFRSYHQRNQHLVKVHNCKAHCKFKCRLCDAPFRSVYKRNEHLVNVHKCEAQYKCNICNKAYLLKSLLMNHIKSYHLMERNYQCTECGYRFIAKKSLKSHMVKHTGERNFACEICHKSFTRRDIMTEHMKIHDHDSRLICEVCSMTFIQKCRLRSHLLSHHDTDKKQINTKDLKIPKNSKITVKNGNLEINFSSMTQTSYDKRTSQDKIKNKENLLTILKYSNAIPFKNKSYLGFICGYCDATYPDPLDLRVHTQNDHEEERLEFKSSFEMAKYTVKLDVTNLCCLLCSEKMDNLSKLKDHLVKIHDKTIYDDIKDHIKEFKLKKGDVFDCAMCPSSYETFKMLNQHMNKHYSNYTCPKCDKSFAIKRSLYAHQKIHQEGTFKCDLCEKVFSSRWKKNHHEKAKHLGASSISNCPYCDVSFRSYHQQNQHLVNVHNVTKSQYKCNICNKAYLLKSLLMNHIKSYHLMERNYQCTECGYRFIDKKSLKSHMVKHTGERNFACEVCHKSFTRRHIMTEHMKIHDHDSRLICEVCSMTFIQKGRLRSHLLSHHGISIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -