Eedi034418.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000026.1:11853745-11858299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00094 0.14 14.0 1.4 1 23 66 89 66 89 0.93 2 23 0.12 17 7.4 0.1 2 23 117 139 116 139 0.96 3 23 0.0018 0.26 13.1 0.3 1 23 161 184 161 184 0.93 4 23 6.7e-05 0.0096 17.7 1.5 3 23 191 211 190 212 0.94 5 23 0.00013 0.019 16.7 2.1 1 23 217 240 217 240 0.95 6 23 0.0069 0.99 11.3 1.8 3 23 247 268 246 268 0.90 7 23 0.0016 0.23 13.3 3.8 1 23 272 295 272 295 0.97 8 23 0.01 1.5 10.8 1.1 3 23 303 323 302 323 0.97 9 23 0.0061 0.87 11.5 2.6 1 23 329 351 329 351 0.97 10 23 6.1e-05 0.0088 17.8 1.9 2 23 481 503 480 503 0.95 11 23 4.1e-05 0.0058 18.3 1.3 1 23 508 531 508 531 0.96 12 23 0.0025 0.36 12.7 0.4 1 23 536 558 536 558 0.97 13 23 0.027 3.9 9.5 1.7 2 21 561 580 561 583 0.94 14 23 0.0061 0.87 11.5 0.3 2 21 591 610 590 611 0.94 15 23 0.0071 1 11.3 0.8 1 23 664 687 664 687 0.95 16 23 1.5 2.1e+02 4.0 0.0 3 23 716 737 714 737 0.95 17 23 0.28 41 6.2 0.0 2 23 760 782 759 782 0.95 18 23 3.5e-05 0.005 18.5 0.3 3 23 789 810 788 810 0.94 19 23 0.0011 0.16 13.8 0.5 2 23 815 837 814 837 0.95 20 23 0.043 6.2 8.8 7.0 1 23 842 865 842 865 0.97 21 23 1.7e-05 0.0024 19.6 7.0 1 23 869 892 869 892 0.97 22 23 0.0003 0.043 15.6 0.3 2 23 899 920 898 920 0.96 23 23 4.2e-05 0.0061 18.3 1.0 1 23 926 948 926 948 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCACTGCGTGCTTCAACATCGAAGCAAAGTTTTCTCACTCACGCTATAAAATGTACGGAAAATTGCAAGGAATCTGTAGAAACCGTCAAGCTTACCAATAAAAAGCCATGTGTAACACAAATTAGGGAGAATATAGCTTGTATCTTTAACATGTCCACGGCTATACCcttcaaatattttatgagCAAGTTTAGATGTTTTTATTGTCCAGAAGACTTCAATGATTGCGATGATCTAAAACAGCATACGGTCATCGAACATCCCTTATGTAATACGAAATTGAAATCTATGAAGTTACGTCACAGAAACGACGGCGTTATCAAAGTAGACACTTCGAACTTATCATGCAAAATATGTTTTGAAAATATACAAGATTTAGAATCTCTAATAAACCATTTAAACActgaacataaaatatatttcgataAATCACTATCCATCAATTTACAATCctataaactaataaaagataattttccATGTCCTTTCTGTGGGGAAATTTTTAGGTATTTTCGAACGTTGTTGAACCATGTCGTTAAATTGCATTCggacaataaaaatatatgcatgCACTGCGGAATGGCGTTCAGGAATGCGCCGAATTTGCGAACCCATATCGCTCGGCATCACAGGGCTGCTAATTTTAAATGTACTAAATGTGATTTGAGTTTCTTTTCGAATTACTATCTTCAAACTCACCTGGGTCGAGTGCACGGAACAAAAGTTGTGGACTGTCTCAAGTGCCATGAAAAGTTTACTTCATCATACGAGATGCAAAGACATAAGATAGATGTACATAGTTCCGGTCATGAGTGTTCCTACTGCCATAAGTTGTTTACGGGAAAATCTTCTGTAGTCGACCACATAAGAAGGACACATTTGAAAGAGAAGAATGTGGCATGCACGGTATGCCATGAGAAATTTTTCGATGGACAGAGTCTGAAAGTTCATATGGTGAAACATTGTGGAGAAAGAAATTTTCATTGTGATATCTGTGGGAAAAAATTTCTATGGAAGAAAAATCTTAGAGAGCATATGTCTTCGCACAATGAAGGCCCGTACGACCACTGTACCTCTACCTCTGAGCTGAGAAGGAAAAATTTGCAAATACTGTTCAACAACACATCTATAATTCCGTTCAAATGGCGCGGCAGGTATCTGTGTTTTTACTGCTGCGAAAATTTTGCGGAATATCCAACGTTCAGAAAACATACAAAGTCCCACGCACTATGCAGTTTTAGCGATTACGCTTTGAAAATTATCAAAGGAAATCATGTGCATATAAAAATAGATGTATCCGAGATTATTTGCGAAATATGTTACGAGCAATTAACTAGTTTTAACGAAATTATAGATCACTTGATAGGTAAACATGGAATGGAGTatgataaaagtttatttataccCTTTCAAGAATATAGATTATCAGACTGTCAGTGCCAGTTATGCGGccaaaaattttcatattttggcAATCTTATCAGTCATATGAACATAACCCATCCGCAAAACAATTTCATATGCGATAGTTGTGGGGAAACGTTCAATAGGAAGAGAGATTTGGCATTGCATATACGACATACTCATCGAGAAATCGGTTATCCGTGCGATGAATGTCCAGAAATATTTGAATCGTATTTACTTTTACGGAAACACAAAAAATTCCATTTCAGAAGATGTAGGGTGTGTAACTTACCTTTTCCGTCATACACACTCCTGCAGAAGCATATAAAATGCGATCATCCCGATTACGGTTGCGACAAGAGCTGCCCTAATTGTTCCAAAGAATTCCAAACTTTTAAAGGATTAAATATGCACATTAGGATATGCATACCAAAACCACAAGTTAAACCCGCAAAGGCTACCTTTCCTGGCGGCAATTTGCTACAACCGATTAAGAAACAGAACATACTGCAAATTAGAAGGAATATTCAATGTGTCTTAAATATGTCGACAGCTATACCTTTTAAATTTTTCGCTAAATTTTCATGTTTCTATTGCTCGAAATACTTCGTAGAATTCGACGACCTTAAAGAACATGTTGTCACCGAACACCCGATCTGTGATTTGACCGAGAAATGCATGAAAAATTGTAAAGGAGATAGAATAACAGTCAAAATCGACATATCCTCGTTAGCTTGTAAAGTTTGCTCTCAACCGATGGAAGATTTGGAAACACTTATAGACCATCTCATAACAAAACACACGGTAGATTACGATAAGTCATTGACAGGATGCTTCGAACCATTTAGAGTAATAAAAGACAATATACCGTGTCCAATTTGTGCTAACGTTTTTCGATATTTCGGTATACTTTTAAGGCATATAAACTCTGAGCatagtaacaataataaaatatgtgattTTTGCGGACGTAGTTTTAAAAGCTTCGCTAATTTGAAAGTCCATATAAGTTACGCGCATACTGGCTCGTCTGAGTGTGAAATATGTGGTGCGAAGTTCAAGAATCCGTGGTGTCTAGGACGACATAGGGCTAAATTACATAACTCTAAAGATTTCCAGTGTAAGAAATGTTCGGAATGCTTTCAATCAGAGTATCATAAACAGAAACATCTGATAAAAGTTCACGATATCGGTCATAAGTGTACCCATTGTGGGAAAATGTTTACAAGGAATTCCTTCATGAAGGATCATATACGCAGGACACATTTGAAAGAAAAGAACGTTCCATGTACAGTGTGCAATGAAAAGTTCTTCGATAATTATTTACTGAAGTTGCATATGGTCAAACATAAAGGTGAGAGAAAGTTTAGTTGTGAAGTTTGCGGTAAATCGTTTTTGAGACGAAGCAATTTGAGTTCACATAAGGAAATGCACAAGAAGTATGGACATGAGTTACctaatgattaa
- Protein Sequence
- MSSLRASTSKQSFLTHAIKCTENCKESVETVKLTNKKPCVTQIRENIACIFNMSTAIPFKYFMSKFRCFYCPEDFNDCDDLKQHTVIEHPLCNTKLKSMKLRHRNDGVIKVDTSNLSCKICFENIQDLESLINHLNTEHKIYFDKSLSINLQSYKLIKDNFPCPFCGEIFRYFRTLLNHVVKLHSDNKNICMHCGMAFRNAPNLRTHIARHHRAANFKCTKCDLSFFSNYYLQTHLGRVHGTKVVDCLKCHEKFTSSYEMQRHKIDVHSSGHECSYCHKLFTGKSSVVDHIRRTHLKEKNVACTVCHEKFFDGQSLKVHMVKHCGERNFHCDICGKKFLWKKNLREHMSSHNEGPYDHCTSTSELRRKNLQILFNNTSIIPFKWRGRYLCFYCCENFAEYPTFRKHTKSHALCSFSDYALKIIKGNHVHIKIDVSEIICEICYEQLTSFNEIIDHLIGKHGMEYDKSLFIPFQEYRLSDCQCQLCGQKFSYFGNLISHMNITHPQNNFICDSCGETFNRKRDLALHIRHTHREIGYPCDECPEIFESYLLLRKHKKFHFRRCRVCNLPFPSYTLLQKHIKCDHPDYGCDKSCPNCSKEFQTFKGLNMHIRICIPKPQVKPAKATFPGGNLLQPIKKQNILQIRRNIQCVLNMSTAIPFKFFAKFSCFYCSKYFVEFDDLKEHVVTEHPICDLTEKCMKNCKGDRITVKIDISSLACKVCSQPMEDLETLIDHLITKHTVDYDKSLTGCFEPFRVIKDNIPCPICANVFRYFGILLRHINSEHSNNNKICDFCGRSFKSFANLKVHISYAHTGSSECEICGAKFKNPWCLGRHRAKLHNSKDFQCKKCSECFQSEYHKQKHLIKVHDIGHKCTHCGKMFTRNSFMKDHIRRTHLKEKNVPCTVCNEKFFDNYLLKLHMVKHKGERKFSCEVCGKSFLRRSNLSSHKEMHKKYGHELPND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -