Eedi041030.2
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000031.1:8363040-8365394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.3 7.6e+02 2.2 0.2 5 21 198 214 196 215 0.91 2 14 2.8e-06 0.0004 22.0 0.1 1 23 228 250 228 250 0.98 3 14 0.00056 0.08 14.7 3.1 2 23 260 281 260 281 0.98 4 14 0.00013 0.018 16.8 0.1 2 23 304 325 303 325 0.97 5 14 0.00071 0.1 14.4 1.9 1 23 337 359 337 359 0.99 6 14 0.02 2.8 9.9 5.1 1 23 367 390 367 390 0.96 7 14 2.5e-05 0.0035 19.0 2.5 2 23 397 418 396 418 0.95 8 14 1.1e-07 1.6e-05 26.4 3.0 1 23 424 446 424 446 0.98 9 14 1.3e-07 1.9e-05 26.2 0.8 1 23 452 474 452 474 0.96 10 14 8.6e-05 0.012 17.3 1.9 1 23 480 502 480 502 0.98 11 14 1.7e-07 2.5e-05 25.8 0.9 1 23 508 530 508 530 0.98 12 14 0.0003 0.043 15.6 0.7 1 23 536 558 536 558 0.98 13 14 0.00013 0.019 16.7 4.3 1 21 564 584 564 586 0.96 14 14 3.9e-06 0.00057 21.5 0.1 1 23 592 614 592 614 0.98
Sequence Information
- Coding Sequence
- ATGGATAACACATTATTAAGAAAGAAGACCATTTGTCGTACGTGTCTCAGCGAGGCGTCGAATTGTAAGTCTTTATTAAGCAAAATGGAAGGAGATGATCGAACTCTCTGTGAGGTTTTATCTTTTGTAACGAGTGTCGATATTTCTATATGCGAAGAATATCCTAAGCAAGTTTGTAATGAGTGCCATATTATGATATACAAAGCCGatgactttaaaaaaagattcatTCAATCCGAAAGCATGTTAAAAAGTGGAATATTCACGTCACATTTCGATGAATTAATCaagaatgaaataattattaataccgatttaataacaacaaaatcaCATTTACCAATGGAAAATCAATTGAACGATAATTATACgagttttttaaaaaagaatcaAAGTTTAGATGTAGACTTACCTGTAGATACTTTTTCCACATTAGGTCCCGATAgttataaatacgaaaattcAATAAAAGAAGAAAGAGATGATTATTTACAAAACGATATTGATGACTTAGTAGATAATATTGTTTTAGAAGATACTCATTTACCAGAATACTCACAAAAAGTTAACTTAGCTGatgcaaataaatgtatttgcggttttatatgtatagatagatcTGGGtttgaaatacataaaaaagaatGTAAGATGTATGTTGGAAAGgatataatcaaatatttttcatgtccAATTTGCAATGAAAACTTTTCTAATTTAGATTTACTACAAATTCACATAAATAATCACAAGGATAATCTAAATGGTATAAATGGTGAATGTCCTAAATGTAAAAAGAAATTCATATGTAAAACCCTATTAATAGCTCATATGAAaactcataaaaataaaattagggtTAAACACAAGAAACCTAAAACAGAACCTAAAAATCAAATTATCCCTATAAAGTGTAATACGTGTAAGGAAGAATTTCCTAATCTGTATGCCTTAGCGAATCACATGGAAGTTCACATCGaagctaaattaaaaaatgaggAAAAAAACTTCCAATGTTCAATGTGTATGAGAAAGTTTGTGCGTAAATTGTCTCTAATCTCTCACATAAAAAGACACGAGGACAAAAAACAGACAAAGTACACATGTAAAGCTTGCAAACGTGAATTTCACCACCGGGCTCATTTAGATAACCATATAAATTTAGTTCATTCTAAAGAAAAGGGTTTATCATGTAACAATTGTGGTAAGAGCTTCGCTACACAAGATTGTCTTGATCACCACATGGAAGGCCATAAAGTTGACAAGAAACATCAATGTAAAGTTTGCGGTAAGACATTCACAATGTTATCAACTTTGACGGAACATATGAGAACTCATACGGGTGAAAAACCGTTTCTTTGCTCTATATGTGGACGAGGTTTTAGTCAGAAGAATAATTTAGCTCAGCATATGAGGAGACATCAGGGTTTGAAGCCGTTTAAATGTGAACATTGCGAACAAAgATTTGTATCAAAAGGTGAATTGGATGCACACAACCGTAAACACAGTGGTGCTCATCCTTTCATTTGCGATGAGTGCGGGAACAGTTTCACCACGTCAAGCTCACTAACTAAGCATCGTAGGATCCATAGCGGAGAACGACCGTACGCTTGCGATTTATGCTCCATGAAATTCACTGCTCTGGGAACTTTGAAAAATCACAGACGAACTCACACAGGGGAAAAACCGTATCAATGTTCACATTGTAAGAAAGCATTTATACAGAGAACAGATCTAGTATCTCATATTCGTTGCCACACCGGTGAACGACCATATATTTGTACTAGTTGTGGCCAAGCGTTCAGGAAAGCTTCGGCTTTGAAGGTCCATATAAAAATTCATGGAAAAGAACCGATGTTACTATAA
- Protein Sequence
- MDNTLLRKKTICRTCLSEASNCKSLLSKMEGDDRTLCEVLSFVTSVDISICEEYPKQVCNECHIMIYKADDFKKRFIQSESMLKSGIFTSHFDELIKNEIIINTDLITTKSHLPMENQLNDNYTSFLKKNQSLDVDLPVDTFSTLGPDSYKYENSIKEERDDYLQNDIDDLVDNIVLEDTHLPEYSQKVNLADANKCICGFICIDRSGFEIHKKECKMYVGKDIIKYFSCPICNENFSNLDLLQIHINNHKDNLNGINGECPKCKKKFICKTLLIAHMKTHKNKIRVKHKKPKTEPKNQIIPIKCNTCKEEFPNLYALANHMEVHIEAKLKNEEKNFQCSMCMRKFVRKLSLISHIKRHEDKKQTKYTCKACKREFHHRAHLDNHINLVHSKEKGLSCNNCGKSFATQDCLDHHMEGHKVDKKHQCKVCGKTFTMLSTLTEHMRTHTGEKPFLCSICGRGFSQKNNLAQHMRRHQGLKPFKCEHCEQRFVSKGELDAHNRKHSGAHPFICDECGNSFTTSSSLTKHRRIHSGERPYACDLCSMKFTALGTLKNHRRTHTGEKPYQCSHCKKAFIQRTDLVSHIRCHTGERPYICTSCGQAFRKASALKVHIKIHGKEPMLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843712;
- 90% Identity
- -
- 80% Identity
- -