Eedi034524.2
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000026.1:12586948-12593126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.15 22 7.1 0.7 1 21 88 108 88 109 0.96 2 37 0.0049 0.7 11.8 0.4 2 23 181 202 180 202 0.97 3 37 0.027 3.9 9.4 0.1 1 23 206 228 206 228 0.95 4 37 1.3 1.9e+02 4.1 1.2 1 16 233 248 233 256 0.77 5 37 0.079 11 8.0 0.2 1 23 262 285 262 285 0.94 6 37 0.0032 0.46 12.4 1.2 1 23 292 315 292 315 0.98 7 37 0.00054 0.077 14.8 0.7 1 23 322 344 322 344 0.97 8 37 0.022 3.2 9.7 0.2 1 23 418 441 418 441 0.95 9 37 0.00023 0.032 16.0 0.5 1 23 538 560 538 560 0.97 10 37 0.0014 0.21 13.5 0.4 1 21 594 614 594 617 0.90 11 37 0.022 3.2 9.7 1.7 1 21 624 644 624 645 0.93 12 37 2.2 3.1e+02 3.5 0.5 1 23 689 711 689 711 0.96 13 37 0.013 1.9 10.5 0.1 2 23 736 758 735 758 0.96 14 37 0.039 5.6 9.0 1.9 1 23 780 802 780 802 0.98 15 37 0.04 5.7 8.9 4.6 1 21 806 826 806 828 0.95 16 37 0.1 15 7.6 0.1 3 23 835 856 833 856 0.93 17 37 0.005 0.72 11.8 4.4 1 23 862 885 862 885 0.96 18 37 0.1 15 7.6 0.3 1 23 891 914 891 914 0.97 19 37 0.017 2.4 10.1 1.3 1 23 960 982 960 982 0.94 20 37 2.8 4e+02 3.1 0.1 2 23 1006 1028 1005 1028 0.93 21 37 0.0014 0.2 13.5 2.7 3 23 1052 1072 1051 1072 0.98 22 37 0.0028 0.4 12.5 3.4 3 23 1078 1098 1077 1098 0.97 23 37 0.00091 0.13 14.1 4.0 1 23 1105 1128 1105 1128 0.98 24 37 0.00041 0.058 15.2 2.1 1 23 1134 1157 1134 1157 0.96 25 37 0.019 2.7 9.9 0.7 1 23 1163 1186 1163 1186 0.97 26 37 0.00018 0.026 16.3 0.4 1 23 1192 1214 1192 1214 0.97 27 37 0.00033 0.048 15.5 0.7 1 23 1220 1242 1220 1242 0.98 28 37 0.00014 0.021 16.6 5.1 1 23 1248 1270 1248 1271 0.96 29 37 0.012 1.7 10.6 0.3 2 23 1391 1412 1390 1412 0.97 30 37 0.41 59 5.7 7.3 1 23 1434 1456 1434 1456 0.96 31 37 0.0043 0.61 12.0 0.7 1 23 1460 1482 1460 1482 0.97 32 37 0.00039 0.055 15.3 0.3 1 23 1487 1510 1487 1510 0.96 33 37 0.00013 0.019 16.7 1.0 1 23 1516 1539 1516 1539 0.98 34 37 0.013 1.9 10.4 2.3 1 23 1546 1568 1546 1569 0.95 35 37 0.0029 0.42 12.5 1.4 1 23 1575 1597 1575 1597 0.93 36 37 2e-06 0.00029 22.5 1.0 1 23 1603 1625 1603 1625 0.99 37 37 4e-06 0.00057 21.5 2.6 1 23 1631 1653 1631 1654 0.96
Sequence Information
- Coding Sequence
- ATGCTTCTAAATAATATGTGGACAGAGAAGGGATTGACAcaagttttctattttttagGAGAACGCGGAAAAACTGAAAACAAGAACGCAATAAAATTAGAGACATCTGAAAAATTTGTTTCAGAAGATTCGTTCAAAGTGACAGAAAAGAAACGTTATCAAAGAAGTGCAAGAGCTGAAGCGCGGTTCGTCACTAAGAAAAACGCGAGCTCTATTCTCGAATGTTGGACACTCTGTCCATTCAGATGGAAAAGAAATCGATTTAAATGCGCTTACTGTGAGGATAATTTCACTGAATGTGCAGAATTGAGGAACCATGTAAGACTTTGTTCGACTCAACACAGCGTTAAGGATATATATAGCAAATTCAAGGAAAtgtctttaataaatatagacaTAACTGAAGCTAGTTGTAGGATTTGCGCTATGCCTTTTCGAGGTGTTAACGAAATGCGGTATCATGTTATAGACCATGGCTATGACTTTGATACATCACATCCCGATGGTGTATTGCCGTTTTTCTTGGACAAGGAGGCCTGGAAATGTGTCATATGTCAGGAATCCTTCAACACTTTTCTCAAACTTTACGAACACATGAATATCCATTATCAGTATTATATTTGCGCCACATGCGGTAAAGGTTATATGACAGCACCTCGCTTGCGAAAACATTCCGAAGTTCATATAACTGGTACTTTTCCATGTGATAAATGTAGACGAGTTTTTACCATGCGTGCAGCTAGGGATTACCATAAATCTCACGCCCATGCTAAGAGTCCGCGGTATGAATGTCCACAATGCAACATGAGATTTGGAGGCTATTATGAAAGAATGAATCATTTGAATGAAGCACATAGAGAAAAAGAAGTGTCTTATAAGTGTGCCCATTGCGAGTTATCTTTCAAAACGAGTGGGAAAAGGGCAATACATGTGAGATCAGTCCATTTTCCACAACAACGCAATTTCGCTTGTCCCTTCTGTAAATGGTTGTTTAAGACTGGCTATGAATTAAAAAGACATATGGTTAAACATACGGgtCCCGCTAATGCGGATACACAGGGGGTAAAAGTTAGACGGGTTAGAAAATTAAAGGAGAACGTATGCGCCAGGCAGATACGTCGACGACGGCGAGCTAACAACGAATTGCCAGAGGAATCAGAAAAGAGAATAGCAAAAACGATGATGCGTAGAAACGCAATGATGCTTTTAGAATGTTCAACGGTTTGGGCCTTTCGTTGGTTCCAAAGCGCGTTTTATTGCTCATATTGTGATGCTAAATTCGTAGATCCATTAGTTTTACGCGATCATGTTAGTTCCTACCACCTTGACGATATACCTACAAAGCGAATATTTTCAAAACTTACtgaaaataatatgattaaagTAGACGTCTCGAACATACATTGTAGGATGTGTAATTGTAAATTAGAAACCATAGACTTTTTAAAGAAACACCTAATAAACACCCATGAAAAATTCTTAAATCAGAATTATAACGATGGCATACTGCCATTTAAACTTGAATCCGATGGTTTTGAATGTCAAATATGTTGTGCACATTTTAcaagtttttgtaaaattaacgAGCACATGAACACACATTTTAAGAACTATATTTGCGACGCATGCGGGAAAGCCTTTGTATCAAAATCGCGTTTTAGAACGCATGTTCAATCACATGAGATTGGTAGCTTTCCATGTGGAATATGTGATGAAATTTTAGAAACTAGGGTCGCTAGAATGTGTCACAGATCAAGAATACACAAGAAAGGCATTAGATACACATGTCCACATTGCCCCGAAGTTTTTACATCGTATTACGCGAGAGCAAAGCATTTGGTAGACGGGCACAATCAACAGAAGAGAGAATACGAGTGCTTCACATGCGGCAAATCTTTTGAGACGAGCTGTAAACGCGCCGCTCATACTCgcGATGGTGGCACAagagaaataaaacttaaaattgaaTGGAAAAAAACTCGAAGAGCTACAGAGGATAAGGCGAACGCTGCCTTGATTCTCGAAGGTTCGAATGCTGTGGCATTTAGGTGGATGCGCGGCAAATTTATGTGCGCTTCATGCCCTAAAATATGTGCAAATGTTAATGAAATACGTTCACACAGTCAAATGCACGATAAGCTAAGCATTTTTCAAAAACAGGAAGTTCGAAATTCGTTTCCACTCAGAATTGATATAACAAATCTGAAATGCAGTATATGCGACATAAGATTGGAAAATTTAGTAGATTTAAAAGATCATTTACAAATAGAACATAGCAAgaattttaacacaaaatatgGTGATGGTGTTATTCCTTTCATTTTGACTACTTCTGAATATCGCTGTGTCCATTGCGATATGTTATTTCAAGGCTATATGAATTTGTTTAGCCATATGAATGAACATTACCAAAGTTTCGTTTGCTATACTTGTGGAAAAGGATATTCCGCTAAACATAAGTTGAGAGCACATCAGAAATGTCACGAAACTGGAAGAATTGCTTGTCCGAAATGTGATCTTGTATTTGCAAATCATGTTGTCAAAAACAGACATGTCGCTACAGCACACGGTCCGAAAAAGCGATATCGTTGTCCAATATGTGATTTAACCTTCAAGTCTTGCCATTCCAGATTAAAACATCTAGATAAAATACATGGTCAGAAGAGAGAATATAGATGTAACATGTGTCCTTCAGTGTTTGGCAGTGGAACATCGCGTTATTCCCATATGAGAATAGTACACAATAGGAAAAAAATGAgaccGATCAAGACGATTAAGTGGAAACGAGGTCGCAGGGTCTATAACGATCATAGAGATAACGCGGCAGTTATTATTGAATTCTCTAACGCCTGTCCTTTTCGGTGGAAACGCGGCGCTTTCGCTTGTTCGCACTGTCCGAAAACGTTTGGTCAATTTCAGGATGTTTTTAACCACGCACAGGAGCATAGTGACCGTCTCGAAGCGATGAGATACGCTCGCccatatgataatatgaaaaTAGAAATTAGCAATTTGAAATGTGTTATTTGTGAAGAAAGTATGAAAGGGATAGAGCAACTAAAGGAGCATTTGCTAAACGATCATCAAAAACCGATCCAGAAAGGTTTCGGTTTGGGTGTGACGCCGTTTCTTCTCCAGGGTAAAGAAATGCTTTGTACACATTGTGATGAACGATTTCCCTTTTTTTCTACGTTAAATAGTCACATGAATCAACATTACCCAAATAACATCTGTTTCCACTGCGGGAAATCGTTCTCAGCCGTTCATCGTCTCAAAGCTCATCAGCTAACTCACGAAACCAATGAAAAGGAGCACAAATGCTCAAAATGCGACGAAGTGTTCAAGACCCGAACGGGACGACGGAACCATATAAATACCAAACACGCACCAGAAAACCGCTACAAATGTCCATATTGCAATTCTTCCTTCAAACGATACTCCGAAAGGTTGAAACATTTGAAAGAAATACACAACCAAAGCGTGGAATATCCGTGTCATTTGTGTTCTGCGATTTTCGCTATGTCTGACCAAAGAACTAAACACATCAAGAATGTTCATATAAAACACAAGCAATTCCAATGCGACTATTGTCCCAGTAAATTCGTGACCGCTGGGCAGTTGAAGAGTCATTTAGTGAGACACACTGGACTTCGAGAGTATCagtgtattatttgtaaaaagagTTACGCAAGGGTTAGGACATTAAGGGAACATATGCGTATACATAATAATGATAGGCGCTTTGTATGCGAGTATTGTAACAATGCCTTCATCCAAAAGTGCAGTCTCAAAAGCCACATGCGATCGCATCATCCCACTGTAGAATCTACTAAGAGTAgAAGAAACTATGCTGACATTGAAATTAAACGAGAAACCGACATTAGTGTACAGAATAGTGCACACCTCGTGTCACTCGCCAAGGCAGAAGGAATAGAACGGAGAACGGAAGGAAACGAAAGGCGTGCCGCTTTTAGaaagaacataaaaattatCATGAGTTCATGCACAGCGTACCCTTTTAAATACAGAAAAGGCACGTACTTGTGTTTCTTCtgcaaaaatacttttttggAACCGGAAAAGTTGAGAGAGCATACCCAAAAAGAACATACAGAAATCCTGATCAAGCTTAAGAAATATGAACCTTTAAAAATGGATTTCGCCATCACAACTTGCAAACTGTGCGGTATCGAAATAAGTAATTATGTAACATTAAAATCACACCTACGTGAGCATGGGAAAGTGTTAGATAATTCGTATGGTGAATCGATTCTTCCCTATAAGTTGTCCAAAGACGAACATTGTTGTCAAGTTTGCGGGAAACGATATGAAATGTTTCTCAGCCTCCATAAACATATGAACAATCATTATGAGCATTTTATTTGCGAAACCTGCGGTAAAGGTTTTGCTACTACTCAACGTATGCTCAACCATTCGCGGACGCATGAGCGGAGAGATTTCCCATGTAAACATTGCGGAGAAACTTTGTCCTCATACGCGTCACTCTACGCTCACATAGCGAAGGTCCACCGTTTGAATAAAAGATACAAATGTCCTATATGCGATGAAAAATTCGCCTCCTATAAGTATAGAATGAAGCATTTGAATACTATACACGGAGAAAAAACGGCTCTTTTCCCTTGTCCATCTTGTCCAAAGGTTTTTGATCTTTGCAGTCGCCGGACCGCACATATACGTTCTCATCACTTACAAGAGCGTAAACACGTTTGTTCCGTTTGCGGGATGAAGTTTTTTAGTAATTATGAGCTGCAGGAACATAGTGTGAAACATGTGGGCGCTAGGATATATCAGTGTGATGTTTGTAAGAAATCTTACGCTAGATTAAAAACTTTACGTGAACATATGAGGATTCATAATAACGATAGGCGATTCGTATGCCCTGTTTGCGGGCAGTCGTTCATCCAAAAATGTAGTCTCAAACAACACGTTAGGGTCCACCATCCTATTCAGGTTAAGGCAAatgtattttga
- Protein Sequence
- MLLNNMWTEKGLTQVFYFLGERGKTENKNAIKLETSEKFVSEDSFKVTEKKRYQRSARAEARFVTKKNASSILECWTLCPFRWKRNRFKCAYCEDNFTECAELRNHVRLCSTQHSVKDIYSKFKEMSLINIDITEASCRICAMPFRGVNEMRYHVIDHGYDFDTSHPDGVLPFFLDKEAWKCVICQESFNTFLKLYEHMNIHYQYYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRRVFTMRAARDYHKSHAHAKSPRYECPQCNMRFGGYYERMNHLNEAHREKEVSYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGPANADTQGVKVRRVRKLKENVCARQIRRRRRANNELPEESEKRIAKTMMRRNAMMLLECSTVWAFRWFQSAFYCSYCDAKFVDPLVLRDHVSSYHLDDIPTKRIFSKLTENNMIKVDVSNIHCRMCNCKLETIDFLKKHLINTHEKFLNQNYNDGILPFKLESDGFECQICCAHFTSFCKINEHMNTHFKNYICDACGKAFVSKSRFRTHVQSHEIGSFPCGICDEILETRVARMCHRSRIHKKGIRYTCPHCPEVFTSYYARAKHLVDGHNQQKREYECFTCGKSFETSCKRAAHTRDGGTREIKLKIEWKKTRRATEDKANAALILEGSNAVAFRWMRGKFMCASCPKICANVNEIRSHSQMHDKLSIFQKQEVRNSFPLRIDITNLKCSICDIRLENLVDLKDHLQIEHSKNFNTKYGDGVIPFILTTSEYRCVHCDMLFQGYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGRIACPKCDLVFANHVVKNRHVATAHGPKKRYRCPICDLTFKSCHSRLKHLDKIHGQKREYRCNMCPSVFGSGTSRYSHMRIVHNRKKMRPIKTIKWKRGRRVYNDHRDNAAVIIEFSNACPFRWKRGAFACSHCPKTFGQFQDVFNHAQEHSDRLEAMRYARPYDNMKIEISNLKCVICEESMKGIEQLKEHLLNDHQKPIQKGFGLGVTPFLLQGKEMLCTHCDERFPFFSTLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHETNEKEHKCSKCDEVFKTRTGRRNHINTKHAPENRYKCPYCNSSFKRYSERLKHLKEIHNQSVEYPCHLCSAIFAMSDQRTKHIKNVHIKHKQFQCDYCPSKFVTAGQLKSHLVRHTGLREYQCIICKKSYARVRTLREHMRIHNNDRRFVCEYCNNAFIQKCSLKSHMRSHHPTVESTKSRRNYADIEIKRETDISVQNSAHLVSLAKAEGIERRTEGNERRAAFRKNIKIIMSSCTAYPFKYRKGTYLCFFCKNTFLEPEKLREHTQKEHTEILIKLKKYEPLKMDFAITTCKLCGIEISNYVTLKSHLREHGKVLDNSYGESILPYKLSKDEHCCQVCGKRYEMFLSLHKHMNNHYEHFICETCGKGFATTQRMLNHSRTHERRDFPCKHCGETLSSYASLYAHIAKVHRLNKRYKCPICDEKFASYKYRMKHLNTIHGEKTALFPCPSCPKVFDLCSRRTAHIRSHHLQERKHVCSVCGMKFFSNYELQEHSVKHVGARIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQSFIQKCSLKQHVRVHHPIQVKANVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -