Eedi037852.2
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000029.1:11725767-11758203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.0071 1 11.3 3.5 1 23 501 523 501 523 0.99 2 34 0.061 8.7 8.3 1.2 1 23 541 564 541 564 0.91 3 34 0.016 2.3 10.2 0.4 2 23 571 592 570 592 0.95 4 34 0.00066 0.094 14.5 1.3 2 23 600 622 600 622 0.93 5 34 0.00035 0.05 15.4 7.8 1 23 632 654 632 654 0.95 6 34 0.0015 0.22 13.4 9.1 1 23 659 683 659 683 0.96 7 34 0.0015 0.22 13.4 9.1 1 23 688 712 688 712 0.96 8 34 0.0015 0.22 13.4 9.1 1 23 717 741 717 741 0.96 9 34 0.0015 0.22 13.4 9.1 1 23 746 770 746 770 0.96 10 34 0.0015 0.22 13.4 9.1 1 23 775 799 775 799 0.96 11 34 0.0015 0.22 13.4 9.1 1 23 804 828 804 828 0.96 12 34 0.0015 0.22 13.4 9.1 1 23 833 857 833 857 0.96 13 34 0.0015 0.22 13.4 9.1 1 23 862 886 862 886 0.96 14 34 0.00035 0.05 15.4 7.8 1 23 1105 1127 1105 1127 0.95 15 34 0.00035 0.05 15.4 7.8 1 23 1217 1239 1217 1239 0.95 16 34 0.0015 0.22 13.4 9.1 1 23 1244 1268 1244 1268 0.96 17 34 0.0015 0.22 13.4 9.1 1 23 1273 1297 1273 1297 0.96 18 34 0.0015 0.22 13.4 9.1 1 23 1302 1326 1302 1326 0.96 19 34 0.0015 0.22 13.4 9.1 1 23 1331 1355 1331 1355 0.96 20 34 0.0015 0.22 13.4 9.1 1 23 1360 1384 1360 1384 0.96 21 34 0.0015 0.22 13.4 9.1 1 23 1389 1413 1389 1413 0.96 22 34 0.0015 0.22 13.4 9.1 1 23 1418 1442 1418 1442 0.96 23 34 0.0015 0.22 13.4 9.1 1 23 1447 1471 1447 1471 0.96 24 34 0.0015 0.22 13.4 9.1 1 23 1476 1500 1476 1500 0.96 25 34 0.0015 0.22 13.4 9.1 1 23 1505 1529 1505 1529 0.96 26 34 0.0015 0.22 13.4 9.1 1 23 1534 1558 1534 1558 0.96 27 34 0.0015 0.22 13.4 9.1 1 23 1563 1587 1563 1587 0.96 28 34 0.0015 0.22 13.4 9.1 1 23 1592 1616 1592 1616 0.96 29 34 0.0015 0.22 13.4 9.1 1 23 1621 1645 1621 1645 0.96 30 34 0.0015 0.22 13.4 9.1 1 23 1650 1674 1650 1674 0.96 31 34 0.0015 0.22 13.4 9.1 1 23 1679 1703 1679 1703 0.96 32 34 0.0015 0.22 13.4 9.1 1 23 1708 1732 1708 1732 0.96 33 34 0.0015 0.22 13.4 9.1 1 23 1737 1761 1737 1761 0.96 34 34 0.00021 0.03 16.1 0.2 1 23 1766 1788 1766 1788 0.98
Sequence Information
- Coding Sequence
- ATGGCATTGTGTGAGAGCCAGCTTGATTCTGTAATGCAAATCAACGGCGCCGAGTCTGCTGGTGAACAAAGCTCCCCGGATAAGAAGAGGATGGAGTCAAACGGAGATATTTATGGTTTGGACAAAGTGCCACCTTTGCCGCTAAGCGTCGACTACCGCTCCCCCGTTTCCCACTTCGTACCACCGGCTGTGGAATTGTACGCGGCAAGGCACAAACCTGAACTTAACGTCGCTCCGGCGACAAGCGAAACGCCACCGCCTCTGAAGAGGAAGCGCGGCCGGCCAAGGGTCGATAAAACGAGCCCTGAGTATTTGGCCAACTTGGCGGCGAGGAAACAGGCTCGCGAAATGGcgGCCGTTATGAACAATAGACCGGATTCGGGAGCCGAAAAGCGGAAGCGAGGCAGACCGAGGGTCGACAAGACAAGTCCGGAGTATTTGGCCAGGAAACGGGCGAGAGAGAATGCTCTGGAGAAGAAAGCGAAGAGAGAGTATAGACGTCGAGCTACCGGGGCGAAAGTCGTCAAGCCTAACAATATGACGTCACGCGTTAAAAAGGTCACCGCTAGTAAAATCGGGACGATTAGGAAAAATTCGCAAAAAATCCCAGTGAGGAAGActggtgataaaaaaataattatacggAGAAATGCGAAATTTCTAAAACGAAAAGACTCAGCAGCATCTTCGTCGGCCGGAGAGTCAACGCCGCGAGTTAAAAGAAAGTACACAAAGAGAGCGCCAAACGCAAGTAAAGATTCGacgCCGAATTCGGAGCGTGTAAAAGGCAAGCGAGGAAGACCTAGGAAGTCTGAACAAATGACTTCTAAACAGCCGGAACAACCAAAGATCCGTGTCAGGAGCAATTTGATGCCTTTGAATACGGAACCGATACCTGTCGACAGCGACGATGAACCTGATCttgGATCGCCAAGTCAGGCGTCCGATTCGTTGAGTTTGGACGAAAATCTCCGAGCGTTGAGACACATACACGAAAAATATGCGAATATAGACAAGgacGATATGTATGAAGCGCATTTACTTGCGGCGAATTTCAAGAAGCCTCCGATGGACCAAGTTCAGAGACTCGCGAGGGATGAAGATGAAGTTCTCTCCGTGCGGAGCTCTGAAGGCTGTGCATCTGTCAAGGAACTGGACACGAGGGTAGAGAAGTTGGATGAGAGTTCGAATAGTTCCGGCAGTAGTAGTTCCGCGTCTTCGGTGGATGGGGACGCGAAGGACGCAGGCAGTTCCAGTTCGTCATCTTCGTCGTCTTCGTCGGACAGTTCTTCGTCATCCGACAGCTCTGACAGCGATAGTGATGCTGAGGAACCGCGCGCAGACGACGACAGATCGTTTGGAGCCTGGTCGTACAGCCTACAATCCGGTACAAACACGGATTCCGGTTCGGATTCTGATCCGGAACGGTCCGGTCCGGTCGAACCGATGCCGGCACAGGACGAGATAAGCGAATCTGAAAACGAGTCGGCCGATAAAAGTTTTCAATGTCATCTCTGCAGGAAGTGGTATTCCACACGGGTTACTCTCAAAATACACAGGCGCGTGCATCAGAACAAGGGCGGCGGTAACTCCCGTTCGCGCCCACGATCCTCCGACAGATACGAGTGCGACTGTTGCAACGAAACGTTTAACCGCCGCGAGAAGCTTTGGGAGCACAAggCTGAAGTACACAGGGGCTCTATGACAGTTCGCTGCGAGGTTTGCCGGAAGTGCTTTGAGGATGATGCAGAACTGGCGGCCCACGACCGCACTCATACGGCCGACGAACGCGCGGGTCGGTGCTCGGAGTGCGGCAGCTCGTTCGCGCGCTACGAGCAGCTGCGGCGGCACCGCGCGCACGCGCACGGCGGACCGCCCGCGCCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGGTGATGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGGTGAGTGTGTGTCGCACCGTCGCATCGTCACTGTGTCACACCGTCACACCGTCACTGTGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACTGTCACTGTGTCACACCGTCACACCGTCACTGTGTTACACCGTAACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACTGTCACTGTGTCACACCGTCACACCGTCACTGTGTTACACCGTAACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACACCGTCACATCGTCACACCGTCACTGTGTCACTCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGGTGAGTGTGTGTCGCACCGTCGCGCCGTCACACCGTCACACCGTCACTGTGTCACTCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGGTGAGTGTGTGTCGCACCGTCGCGCCGTCACACCGTCACACCGTCACACCGTCACTGTGTCACTCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGGTGAGTGTGTGTCGCACCGTCGCGCCGTCACACCGTCACACCGTCACTGTGTCACTCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTCTGCAAGTCGTCGTTCGCCCGAGCCGACCAGCTCGCTCAGCACCTGAACAGCCACCTCGCGAACTACAAACGTCTGAAGCAATAA
- Protein Sequence
- MALCESQLDSVMQINGAESAGEQSSPDKKRMESNGDIYGLDKVPPLPLSVDYRSPVSHFVPPAVELYAARHKPELNVAPATSETPPPLKRKRGRPRVDKTSPEYLANLAARKQAREMAAVMNNRPDSGAEKRKRGRPRVDKTSPEYLARKRARENALEKKAKREYRRRATGAKVVKPNNMTSRVKKVTASKIGTIRKNSQKIPVRKTGDKKIIIRRNAKFLKRKDSAASSSAGESTPRVKRKYTKRAPNASKDSTPNSERVKGKRGRPRKSEQMTSKQPEQPKIRVRSNLMPLNTEPIPVDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDMYEAHLLAANFKKPPMDQVQRLARDEDEVLSVRSSEGCASVKELDTRVEKLDESSNSSGSSSSASSVDGDAKDAGSSSSSSSSSSSDSSSSSDSSDSDSDAEEPRADDDRSFGAWSYSLQSGTNTDSGSDSDPERSGPVEPMPAQDEISESENESADKSFQCHLCRKWYSTRVTLKIHRRVHQNKGGGNSRSRPRSSDRYECDCCNETFNRREKLWEHKAEVHRGSMTVRCEVCRKCFEDDAELAAHDRTHTADERAGRCSECGSSFARYEQLRRHRAHAHGGPPAPRLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVMRQALLARALAHAPHAQPRQAALPLRRLQGECVSHRRIVTVSHRHTVTVSHRHTVTPSHRHTVTLSLCHTVTPSLCYTVTPSHRHTVTPSHRHTVTPSHRHTVTLSLCHTVTPSLCYTVTPSHRHTVTPSHRHTVTPSHRHIVTPSLCHSAARLRAVRQALLARALAHAPHAQPRQAALPLRRLQGECVSHRRAVTPSHRHCVTLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSVCRTVAPSHRHTVTPSLCHSAARLRAVRQALLARALAHAPHAQPRQAALPLRRLQGECVSHRRAVTPSHRHCVTLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKCGKRFSHAHSLTRHMHNHAKQLYRCVVCKSSFARADQLAQHLNSHLANYKRLKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -