Eedi010205.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000007.1:22900999-22901601[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-09 1.4e-06 29.2 0.1 2 39 10 47 9 52 0.93
Sequence Information
- Coding Sequence
- ATGCCCCCCAAACGAGCATTGTGGTCTGAAAACGACTTAGTAGCGGCAGTCCAAGCAGTACAATGTGGACGGCTGAACACGTACAAAGCTGCCGAAAGGTACAAAGTGCCCAGAAGAACTATACGGAACCACCTCCAGACCgccagtttaaaaaaaagcttaggCCGAAAACCTTTACTTAATGACGAACAGGAAGCTGAGCTTGTGAGCAGAATTATGGGGTTTGCTGCGATAGGATTACCTGTTACACCACTGATTCTCCGCCGGTTAGTCTTCAAATTTTGCGAGAAAAATAACATCAAGCATCCCTTCAATCAACAAGCTAAAGTTGCTGGTAAGGATTGGTTTAAGAATTTCATGAAGAGACATCCGGATATATCACGTAGAAAGGCGCAGTTTATGAACCCAGCTAGGGCTCAAAagctaaataaatttattgtagaTTATCATTTTCAGAGACTGAACGATGTTTATGATAAATTGGATCTCAAAACTCATCCTGAGAAGATTTATAACATGGATGAGAAAGGTTGCCGCCTAACAATTCACCACCAGAGAACGaccttaaaaaatgaaaaagaccGGAAAAGCAGAGAGTACTAA
- Protein Sequence
- MPPKRALWSENDLVAAVQAVQCGRLNTYKAAERYKVPRRTIRNHLQTASLKKSLGRKPLLNDEQEAELVSRIMGFAAIGLPVTPLILRRLVFKFCEKNNIKHPFNQQAKVAGKDWFKNFMKRHPDISRRKAQFMNPARAQKLNKFIVDYHFQRLNDVYDKLDLKTHPEKIYNMDEKGCRLTIHHQRTTLKNEKDRKSREY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041684; iTF_00896707; iTF_00276232; iTF_01242599; iTF_00256779; iTF_00256784; iTF_01218260; iTF_01218261; iTF_00775195; iTF_01034493; iTF_00414988; iTF_00761562;
- 90% Identity
- -
- 80% Identity
- -