Eedi024899.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000018.1:16065614-16070995[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-11 1.3e-08 35.8 0.2 2 41 15 54 14 57 0.91 2 2 0.016 6.5 7.9 0.0 20 38 316 335 309 342 0.82
Sequence Information
- Coding Sequence
- ATGGTGCGTCACTACAAGCGAAAAACTAATGACTCATATTCTCAAGAGTCACTACAAAAAGCTGTTGAAATGGTCAAAGCAAAAGAAATGACCACATACAAGGCTAGTGCAATATTTGGTGTGCCTCGATCAACTATTCTAGCCCGAGTAAAGGGAAAACGTGGTGCGAAATATGAACATTGTGATGTTACTTGCCGATGTATCAATTGCTCTGTGAGATTGGCGCACCAGCGCTGGCGCATGGTGGAAGATGCAACAGAGCCTATGGTGAATATTCTTCGTGTCTGTATATCACCAACGCCGgtTTCTCATATGAATAGAGTTTGCACTACATGCTGGCTTGCTGCTAGGAgaaatattcaaaaacaaatGCGGCAAGATGCCAACAGACCTATTGAAGCCTTCAATGAGGAAACTGATAACAGAGAACCAACACATATACCTGTGCCGCCTCCACTTCCACATATTTCGTTCCCACAACGCCAAGAAACTGCTAGAATAATATCACAAACTTATTCAAGTGTTGCAGCAACCTCAAGACATTGTATATTTTCAGGATGTGAAAATGTTGAACGTTTATTGGTACCAACTGGAGTGAAGGAAATGTTATTATGTCGCTATAGATTATACATTCCATCTTCTGCTCGTGTATGCAGATACCATTTAGAAAATGATTGTTGGGAGCAGTTACAATCTAATATTAGGGATTTTACTGCATCACAGATGGATCACATGCTGAATATGATGGAGAGAATTAATTTAAGAACGTTGGATTGCAATAACATTAATATGATGCCACCCAATCTCTGCCAGTATTGGCTTGGAGTTACAGCTGCTCAGTTCCATGAACTTTTAGCAGAAATACCTAGTCTGCACAATGAAGTGCCTTCTGCAAGTGTGgcattaagtatttatttggCCAAATTGCGTACAGGTGATAGCAATGAAAGGCTCAGTTCTTTATTTGAAATGCCCCGAAGCACATTAGAAAGAAATATGAATAAGGCAAGAAACTGCATGAGCCAACAGATGGTTCCTTTACATTTAAGTTTAAGTTGCCTTAATCACATGACAGTGGAAGAAGTTGCAGCTAGGAATAAAACAATTCCAGAAGGACTGTTCGGGAATCCTAATCTTTCTTCAGAAATGAGACCCGCTATAATATGTGATGCTACATATGTGTACGTATAA
- Protein Sequence
- MVRHYKRKTNDSYSQESLQKAVEMVKAKEMTTYKASAIFGVPRSTILARVKGKRGAKYEHCDVTCRCINCSVRLAHQRWRMVEDATEPMVNILRVCISPTPVSHMNRVCTTCWLAARRNIQKQMRQDANRPIEAFNEETDNREPTHIPVPPPLPHISFPQRQETARIISQTYSSVAATSRHCIFSGCENVERLLVPTGVKEMLLCRYRLYIPSSARVCRYHLENDCWEQLQSNIRDFTASQMDHMLNMMERINLRTLDCNNINMMPPNLCQYWLGVTAAQFHELLAEIPSLHNEVPSASVALSIYLAKLRTGDSNERLSSLFEMPRSTLERNMNKARNCMSQQMVPLHLSLSCLNHMTVEEVAARNKTIPEGLFGNPNLSSEMRPAIICDATYVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -