Eedi016862.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000012.1:17461606-17468446[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-14 1.6e-11 45.0 0.1 1 38 58 95 58 97 0.95 2 2 5.4 2.3e+03 -0.2 0.0 23 31 145 153 145 153 0.88
Sequence Information
- Coding Sequence
- ATGCCGAATGACAGTGCGCCTAACGATAACGTGAAGGATAAAGAAGGGGCCATTCAAAGCGCATTGAAATTAGTAAGTGATACATCTGGAGACATTCCGATTTTGGAGAAAAAAGTGACCGAAGATTTTGATTCATCgtttttttctacaaaaaagAAACGTGCTACTTGGAGTGAAACTAATTTAAGAAAAGCTGTTCTAGCTGTCCAAAAAGGAAAATTGTCGACATATAAAGCAGCGGAAAAATATGGCGTACCAAGAAGAACACTGAGGAGTCACGTCGAATCAGGagatataataaagaaaaaattaggAAGAAAGGCATTGTTTACAGAGGAACAGgagataaattttaacaatCGATTGCGACAATTGATCGATTTGGGCTTACCTCTTACTCCTAAAATTGTTCGCAATGAATGTTTTGATTTTTGTCGGGAATTTAATATTCCGAACAATTTTAATAAGACTTTGGGTCTAGCTGGACTGGGATGGTATCGGGTATTTATTGGTAAAAATCCCGACTTGGCTGAACTCTTAAGTGCTCACAGAACTTAA
- Protein Sequence
- MPNDSAPNDNVKDKEGAIQSALKLVSDTSGDIPILEKKVTEDFDSSFFSTKKKRATWSETNLRKAVLAVQKGKLSTYKAAEKYGVPRRTLRSHVESGDIIKKKLGRKALFTEEQEINFNNRLRQLIDLGLPLTPKIVRNECFDFCREFNIPNNFNKTLGLAGLGWYRVFIGKNPDLAELLSAHRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -