Elun045446.1
Basic Information
- Insect
- Eupeodes luniger
- Gene Symbol
- grau
- Assembly
- GCA_951509635.1
- Location
- OX608075.1:90466443-90468511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 3.6e+02 3.5 0.1 3 19 241 257 239 258 0.93 2 10 2.1 4.2e+02 3.3 0.4 6 23 271 288 271 288 0.97 3 10 9.9e-06 0.002 20.0 2.4 1 23 294 317 294 317 0.97 4 10 4.2e-05 0.0085 18.0 1.3 1 23 325 347 325 347 0.97 5 10 5.9e-05 0.012 17.6 0.6 1 23 355 378 355 378 0.96 6 10 0.042 8.3 8.6 0.5 3 23 386 406 385 406 0.96 7 10 0.0065 1.3 11.1 2.8 2 23 415 436 414 436 0.97 8 10 2.5e-06 0.00051 21.9 0.3 1 23 443 466 443 466 0.97 9 10 5e-07 0.0001 24.1 0.7 1 23 472 494 472 494 0.98 10 10 1.3e-05 0.0026 19.7 4.4 1 23 500 523 500 523 0.97
Sequence Information
- Coding Sequence
- atgatttgtagACTTTGTTTAAAAGATATTCTCGAAGTGATAAATATATTTGATGAAATTGGAATCGAACTCAATGTCGTCGGTATATTAAAGAAATACTTTTGGTTTGAGcCAAAAATTGATGATCCTATATCAACAGCAATATGCAACGATTGCTGGTTGAGAGTGGTGAACTTCCATGAATACTATTTATCAGTAGAAGAAGCTCATCGTCTTTTAGCCGAAAGATTTTTCGTCAAAGCTTCTTCGCCTTTATTAGTTCATGATGATATAGATGATGAAAACATTGAAAAGGACGATGAGAACTCCTCGGATTTGAAAGATGATGATGTGAATAAGCATTTGGAATGGGATGTGGAAGAAGTCAATTTTAGTTATCCACTTATAGAAGAAGaaGAAAAACCCGAAGAAGGTGAATTTTCAAcgaatgatgatattatcattgAAGAACTACTTGAAGATACTAAAGAAGACATAAAAGATGTTGACATCAAACCACAAACGGAAGAACTTCTTACTACCAACGAACGTTGCTTGTCTCTTCGGACGAGAACCATAAGCAATGTTAAACTCTCACCTGATACAACATCTGCCCAAACAAAGACCCGAAGAAAGCAGGAAAAGAAATCACCCACTGAAAGATCTCTCGAAAAAGaatcaaaatataatatacGTGCCAAAGAATATGATGAATTAATAGCCAAACACATGAAACTCGCTTGCGAGATATGTCATGTTGAGCTGATTGACTTCACTTCGTTGCGTCAGCATTTCTGGAACTCACATGGTCAGAAGGGTTATATTGTTTGCTGTAACAAAAAGCTCTTTAAACGTGTTCTCCTTGTGGACCACATCAATAAGCATTTAGATCCTGAATACTTCAAatGTCAAAGCTGCAATAAGGTCTTTGCTGATAAACAGTGCTTGAAAAATCACATGCTCATAATCCATCAGTCCGATGAAGAAAAGCCGTTTCAGTGTGAGTTCTGTTCAAAGCGATTCATCAAGCAGTACCTGCTAGAGCAGCATCAAGTCATTCATGTGCCATTAGAAGAGCGAAAGTTTCCCTGCGATTTCTGTCCGAAAGTATTTCCAAGTGAAAACACTTTAAATACTCATCGTAAAAATACTCACCTGCAGGAAAACGGACGAATGTGTCATATTTGCGCCAAAGTCATTCGTGGAAGAGCAATGTTTGAAAAACATCAACTCGAACACAATGGTGTTAAACAACCCGAAATCCAATGTGAAAAATGTGGATCATGGTTGAAGAACAAACACAGCCTACAAAAGCATTTGCGACGTCACAACGAAGAAGGGAAAATGCACACGTGTAATATTTGTGGCAAAGTTGCACCCAATCAAAGTGCTCTACGAAGTCATATACGTTATGTGCACGCATCAGAACGAACTTATGCGTGTAGTGTGTGTGATAAGTCATTTAAAAAACCActcaatttaaaagAACACATGACAACGCACACGGGAGAAGTTTTATATTCCTGCCCACATTGTCCgaaaactttcaattcaaatgcaaatatgcATTCTCATCGAAAGAAAATCCATCCCAGAGAATGGGAAGCAAATAGGAAACATCGTAAAGGCAAAATTGCTGGTATTTCGTCAACAGTCCCAAAAACCCAAACCACAGATGACGAAGTAACGCCAGAAGATGAAAACACAGAAAgttga
- Protein Sequence
- MICRLCLKDILEVINIFDEIGIELNVVGILKKYFWFEPKIDDPISTAICNDCWLRVVNFHEYYLSVEEAHRLLAERFFVKASSPLLVHDDIDDENIEKDDENSSDLKDDDVNKHLEWDVEEVNFSYPLIEEEEKPEEGEFSTNDDIIIEELLEDTKEDIKDVDIKPQTEELLTTNERCLSLRTRTISNVKLSPDTTSAQTKTRRKQEKKSPTERSLEKESKYNIRAKEYDELIAKHMKLACEICHVELIDFTSLRQHFWNSHGQKGYIVCCNKKLFKRVLLVDHINKHLDPEYFKCQSCNKVFADKQCLKNHMLIIHQSDEEKPFQCEFCSKRFIKQYLLEQHQVIHVPLEERKFPCDFCPKVFPSENTLNTHRKNTHLQENGRMCHICAKVIRGRAMFEKHQLEHNGVKQPEIQCEKCGSWLKNKHSLQKHLRRHNEEGKMHTCNICGKVAPNQSALRSHIRYVHASERTYACSVCDKSFKKPLNLKEHMTTHTGEVLYSCPHCPKTFNSNANMHSHRKKIHPREWEANRKHRKGKIAGISSTVPKTQTTDDEVTPEDENTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975022;
- 90% Identity
- iTF_00694060;
- 80% Identity
- -