Basic Information

Insect: Eupeodes luniger
Gene Symbol: tc3a
Assembly: GCA_951509635.1
Location: OX608075.1:94494416-94497607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7 3.5e+02 3.5 0.3 2 23 199 221 198 221 0.90

2 9 0.13 25 7.1 1.0 6 23 230 247 230 247 0.99

3 9 3.9e-05 0.0078 18.1 0.2 1 23 253 275 253 275 0.99

4 9 8.6e-06 0.0017 20.2 1.4 1 23 283 305 283 305 0.99

5 9 3.9e-05 0.0078 18.1 0.3 2 23 312 334 311 334 0.95

6 9 8.2e-07 0.00016 23.4 0.5 3 23 342 362 341 362 0.96

7 9 0.00029 0.059 15.4 0.4 2 23 371 393 370 393 0.95

8 9 0.00021 0.042 15.8 0.1 1 23 400 423 400 423 0.94

9 9 0.0021 0.41 12.7 0.2 1 17 429 445 429 446 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7	3.5e+02	3.5	0.3	2	23	199	221	198	221	0.90
2	9	0.13	25	7.1	1.0	6	23	230	247	230	247	0.99
3	9	3.9e-05	0.0078	18.1	0.2	1	23	253	275	253	275	0.99
4	9	8.6e-06	0.0017	20.2	1.4	1	23	283	305	283	305	0.99
5	9	3.9e-05	0.0078	18.1	0.3	2	23	312	334	311	334	0.95
6	9	8.2e-07	0.00016	23.4	0.5	3	23	342	362	341	362	0.96
7	9	0.00029	0.059	15.4	0.4	2	23	371	393	370	393	0.95
8	9	0.00021	0.042	15.8	0.1	1	23	400	423	400	423	0.94
9	9	0.0021	0.41	12.7	0.2	1	17	429	445	429	446	0.89

Sequence Information

Coding Sequence: ATGATCATACAAAAGAATGTTCCTACAGATATCAAACTAGAAGTCAAAGAAGATGCCGAAGTTCGTCTGAATGTGAATGACGACggtgataatgatgataatgaagttaatgaaaataatgatgataatgatgacgaTGAGACTGCAAACAACAATGAAAATCAAACACCCTCCCGCGAATCACTATCTGTTAACTTAGAAGCTCCGCCTGCAAGCTCAACTAGAAGTCGAAAATCTGTGGAAAATTATCACAGCTCAACTAAAAGTCGAAAATCTGTCAGTTACAATGGTTCTTCTAGTGAAGATGACAAAAGTTTTAGTCATACCGAAATTGAACGATGCAATTCAATGGATTGGCAAAATGATGAGGAAAACTCGGACAACACTGAAGAGGATAGCGACTATGAGGACAGCACAATTAAGGCAAACAAATCAAAGGAACCTACTAATCAAACTAAAAAACGCCGTGGTAGACCGAGAAAAGGTGAGACCAGATCAAGTCCTTGCAAAAAACCACGAACTTCTggggaagtgaatttaaaaagaaaacgcaTGCAAGAGTTTGACGAAATAATTGCTCAGAATATGAAACTTTCATGTGCCATGTGTaacgatatatttttaaactttgccGCCCTCAAAAGACACTTTCGTTCCGAACACAACGAATGTGGTTATGTGGTTTGTTGTACGAAAAAGTTTCGCAAACGCGGTGTTCTCGTGGATCATATATGCACGCACCAAAATCCAGAGTACTTTAAGTGCGAACAATGTGGAAGGGTGTTGGCCAACAGAAAAGGTCTGGATAGTCACATGCTAACTCATGATACAGAAAAGCAACGAATATATCAATGCGATCAATGTACTTTGAGTTTCTACACGAGGCCTTTGTTGACACGTCACTTGCAAACGCACATTTCTGAACGAAACATTAAATGTCCTGATTGTGATAAGTTtttttcaacACAGGACATCTTGCGCACCCATGTTAACAATGTTCACAATGCCGCCTACACAAGGATCTGCGATCAGTGTGGTAAATCTTTCCGCCGGCCAGATGCTTTTAGACGCCATCAGCTGGAACATGATGGTATAACACAACCAATGGTTCCTTGTGAAAAATGCAATGTTAAGCTAACGAGCAAATATGGATTGAAGCGACACATGGAATCAATGCATCCCGAACAAGATGTCAAACATATATGTAGTGAATGTGGTAAGGTTGCGCCAAGTGCTGCTGCTCTGCAACGTCATATTTCCTACATGCACAAAATGGAACGTAAATACAAGTGTCCAATGTGTGATAAAGCATTTAAAAAGACTGGTGGACTTAAGGTAgCAAGACTTCACATGGCATGGAATGCCGATGGCAGCACCCATTCAAACGATTGGCGAAAAGTGATATTTTTAGACGAGAAAAAATTCAACTTGGATGGGCCGGACGGATATAACTATTacttccatgatttaagaaaggaacaGTTATTTTTAGATCGACATCATAGCCGAGAGGGAGGAGTAATGGTATGGGGTGCAATATCATATTATGgcacaattgatttatattttgtgaACTGTAAAATGACGGCGGCATACTACAAGACTATATTAGAAACAGCACTACCTCAGTTCCAGGATACTTTTGGACCGATTCCGATTATTTTCCAGCAGGACAACGCACCTATCCACACTGCTGGTGTAATTAAAACATGGTTGCAAGaccaaaatattcaacaattaTCCTGGCCACCCTACTCTCCAGATTTAAACATAATCGAAAATGTTTGGGGGTGGTTAACACGCAAAGTTTATGAAGGTGGTAAGCAGTACGCAAATAAAGATGAGATTATTGAAGGCATTAAAGTGACCTGGGCACAAATTTCTTTAGATCTCCTAAAATCTTTGTATGATTCCCTTCAAAATAAGGGTGGCTGTACAAAGTACTAA
Protein Sequence: MIIQKNVPTDIKLEVKEDAEVRLNVNDDGDNDDNEVNENNDDNDDDETANNNENQTPSRESLSVNLEAPPASSTRSRKSVENYHSSTKSRKSVSYNGSSSEDDKSFSHTEIERCNSMDWQNDEENSDNTEEDSDYEDSTIKANKSKEPTNQTKKRRGRPRKGETRSSPCKKPRTSGEVNLKRKRMQEFDEIIAQNMKLSCAMCNDIFLNFAALKRHFRSEHNECGYVVCCTKKFRKRGVLVDHICTHQNPEYFKCEQCGRVLANRKGLDSHMLTHDTEKQRIYQCDQCTLSFYTRPLLTRHLQTHISERNIKCPDCDKFFSTQDILRTHVNNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGITQPMVPCEKCNVKLTSKYGLKRHMESMHPEQDVKHICSECGKVAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKVARLHMAWNADGSTHSNDWRKVIFLDEKKFNLDGPDGYNYYFHDLRKEQLFLDRHHSREGGVMVWGAISYYGTIDLYFVNCKMTAAYYKTILETALPQFQDTFGPIPIIFQQDNAPIHTAGVIKTWLQDQNIQQLSWPPYSPDLNIIENVWGWLTRKVYEGGKQYANKDEIIEGIKVTWAQISLDLLKSLYDSLQNKGGCTKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -