Elun034666.1
Basic Information
- Insect
- Eupeodes luniger
- Gene Symbol
- -
- Assembly
- GCA_951509635.1
- Location
- OX608074.1:81436190-81438728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.4 12.8 0.6 1 23 114 137 114 137 0.93 2 13 0.0018 0.37 12.9 1.5 3 23 144 164 143 165 0.94 3 13 2.3e-05 0.0047 18.8 3.8 1 23 174 197 174 197 0.96 4 13 1.6e-07 3.2e-05 25.6 5.5 1 23 351 373 351 373 0.98 5 13 7.8e-07 0.00016 23.5 3.2 1 23 379 402 379 402 0.97 6 13 0.00028 0.055 15.5 1.1 1 23 408 431 408 431 0.96 7 13 1.4e-06 0.00027 22.7 3.9 3 23 446 466 445 466 0.97 8 13 2.9e-05 0.0058 18.5 0.8 1 23 471 493 471 493 0.98 9 13 2.1e-06 0.00042 22.1 0.5 1 23 499 521 499 521 0.96 10 13 3.6e-07 7.3e-05 24.5 1.4 1 23 527 549 527 549 0.98 11 13 5.4e-07 0.00011 24.0 0.9 3 23 557 577 555 577 0.96 12 13 3.8e-06 0.00076 21.3 0.8 1 23 583 605 583 605 0.99 13 13 0.0013 0.25 13.4 0.5 1 23 610 633 610 633 0.96
Sequence Information
- Coding Sequence
- atgcTAGACTACGATATCGATAAGATGTGTAGAGTGTGCCTCCAAACAAATCTcgatttatttttgctttttgacGAACAAAATGCAATCGACGGAGTTTGTTTGTCCAATATGATCTCAGAAATGACAATATATGCAatccGTCGATATGATGACTTTCCCCATCAAATTTGCTCAGAATGCATGCAAAAAGTTCGTAGTGCATACGAACTCAAGAAACTATTTGAACGATCTCATCGTAGACTTCttacttatttagaatcaaataacaaaataacagACGACACTACTGCCGATGAACAGAATAATAAGGGTGTCCAAACGGACGACTCGACATTATTCCCATGTGAGAAATGCGATGCTAAATTTATTTCCTACCAATCCCTGAGggaGCACCGTACGGAATCGCATAAAGGATCTGAAAACATTTGTCGATTCTGCTCCAGAAAATTCAACCGAATCGGAGATCTTAAAAATCATATAGCAGTGCATCATCCGGAAGTACAACACTTTCATCCCCACGAGTGCCTTATCTGCAATAGAAGATTCACTCGGAAAGAGCATGTCAATCGACACATGGCCAAGATACACAAATTGGAGAGTGTACAAATAATGACTGGAGATGAAGATAGCATACCAAATGAGAAtacaaaatgtaatgctaATGAACTGGAAATGCTTCTTGAAACTGAAGCGGATTATGAAAATCTTACAAAGGCAGATGATAACTCcgaaattttatcaaataaagtTTCTGAAGActatgatgataataatgatgatgacgatgacgattaCAATGACCATGGAAGCATTGGTACAGCAGAAAATCCAATTAGTAGTGACGAGGATGACAAGCCGCTGGCTGGTTTGAGAGATATATTTAATACTAAGACTAAagACCTAGAAACTATTtcaataaaagaagaagaacttgATGATAATCTGCTTGAAAAAACATACTGCGTCCCGAAAACAGACGATTTAGAAATTGAGAAGAAAGATAGCGCACCACGAAGTTTTGGAAATAATCAAGACGtaaaaaagcaatttaaatGTTCCAAGTGTAATAAATCATTTACTCGACGCGGTCATCTCAAACGTCATATTCTTTCGCatgatctaaaaaaaaaattcatatgtAATATTTGTAGTAAACGATTTAGTCGAAGTGATCATCTTAAAAGTCATATTATGAGCAAGCATGACTCTACTAAAGCTTTTAAATGTGAAATTTGCGACCGAACCTATTATAGAGCTGGTATGATAAAGAAACACAAAGAAATGAAACATAACATGCAGAACCTGCCCCAAAATATTGTCAAAACAGAACATTGTAAAGTTTGTAATAAGTCCTTCAGCACAAAAGCATACCTGCAAAAACACATGAGTATGCATACGAATAAATcgtttaaatgcaaaatatgtcCAACGGGCTTTGAGTCGAAAGAAGCTTTAAAGCAACACAATAAATCGCATGGCAAGGAAAAACCATTTTTGTGTTCTGAATGTGGCTTGCGTTTTGTTAGAAATGACTACTTGCTTATCCATATGCGTAGGCACACCGGAGAAAAGCCATTCAAATGTAAATATTGCGGGAAGGGCTTCCCAAGGAAAACCGATTTAAATGTTCACGTTAaATATCACACCGGGGAGAAAACACACTTGTGTACGATTTGTGGCAAAGGATTCCAACGATCTTACAACTTAGTAGTTCACATGCGAGTGCATACTGGTGAAAGACCATATCAGTGTGTCCACTGTCCAAAGAATTTTGCCCAGGGCAACGACTTGAAAGCACACATAAGGCGGCACACTGGTGAGCGGTATAAGTGTCATATATGCGAAGTTGGATTTGTACAGGGGTACCTTTTGACTCAACATAAAATCTCTGTTCATGGGCTGCAGAACGAGGCAAGGAAGGGTCGAGTTTCTAAagtaaaaccaaataaaacaatatcagagatTATTTCCGAAGCTATTGACGATACCAGTAAAGCTATTGATGATGCCACGAGTTTAATTAAAAGAGAACCACATGCTGGTAACACTTTGTGA
- Protein Sequence
- MLDYDIDKMCRVCLQTNLDLFLLFDEQNAIDGVCLSNMISEMTIYAIRRYDDFPHQICSECMQKVRSAYELKKLFERSHRRLLTYLESNNKITDDTTADEQNNKGVQTDDSTLFPCEKCDAKFISYQSLREHRTESHKGSENICRFCSRKFNRIGDLKNHIAVHHPEVQHFHPHECLICNRRFTRKEHVNRHMAKIHKLESVQIMTGDEDSIPNENTKCNANELEMLLETEADYENLTKADDNSEILSNKVSEDYDDNNDDDDDDYNDHGSIGTAENPISSDEDDKPLAGLRDIFNTKTKDLETISIKEEELDDNLLEKTYCVPKTDDLEIEKKDSAPRSFGNNQDVKKQFKCSKCNKSFTRRGHLKRHILSHDLKKKFICNICSKRFSRSDHLKSHIMSKHDSTKAFKCEICDRTYYRAGMIKKHKEMKHNMQNLPQNIVKTEHCKVCNKSFSTKAYLQKHMSMHTNKSFKCKICPTGFESKEALKQHNKSHGKEKPFLCSECGLRFVRNDYLLIHMRRHTGEKPFKCKYCGKGFPRKTDLNVHVKYHTGEKTHLCTICGKGFQRSYNLVVHMRVHTGERPYQCVHCPKNFAQGNDLKAHIRRHTGERYKCHICEVGFVQGYLLTQHKISVHGLQNEARKGRVSKVKPNKTISEIISEAIDDTSKAIDDATSLIKREPHAGNTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694015;
- 90% Identity
- -
- 80% Identity
- -