Basic Information

Insect: Eupeodes corollae
Gene Symbol: -
Assembly: GCA_945859775.1
Location: CAMAOS010000314.1:1727274-1728407[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0093 1.2 10.6 0.5 3 21 123 141 122 142 0.92

2 7 0.002 0.25 12.7 5.2 2 23 157 178 156 178 0.95

3 7 1.1e-06 0.00015 22.9 5.9 1 23 184 206 184 206 0.99

4 7 0.00019 0.025 15.8 0.4 1 23 212 235 212 235 0.97

5 7 2.7e-06 0.00034 21.7 0.9 1 23 241 263 241 263 0.98

6 7 0.0071 0.91 10.9 2.7 1 23 269 291 269 291 0.99

7 7 9.2 1.2e+03 1.1 0.0 1 9 299 307 299 314 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0093	1.2	10.6	0.5	3	21	123	141	122	142	0.92
2	7	0.002	0.25	12.7	5.2	2	23	157	178	156	178	0.95
3	7	1.1e-06	0.00015	22.9	5.9	1	23	184	206	184	206	0.99
4	7	0.00019	0.025	15.8	0.4	1	23	212	235	212	235	0.97
5	7	2.7e-06	0.00034	21.7	0.9	1	23	241	263	241	263	0.98
6	7	0.0071	0.91	10.9	2.7	1	23	269	291	269	291	0.99
7	7	9.2	1.2e+03	1.1	0.0	1	9	299	307	299	314	0.81

Sequence Information

Coding Sequence: ATGCCGCTTTTACCTAAAATACGGATTGAAGAACAGCCGAGTTGCTTCATTATTGATTCTGATGAGGAAACAGGATCAGAAGGTACACAAAGTGTGGAAAACAATGGAACCAACTATACATTCAACGATATGTGCGAAGATCTCTTAGTAGGTGTCCATAATCCTCTTAGTACCAAACAGGTTGCAACAGAGAAGGCCACCAACAAGCTTGATGATGATAATAACTTGAGTTTAGGTGTGAATGGATCTAGATGTATCCAAGAGGAAGAAGGAGCAGGTTTCGATGATTTCGAGTTTGAATTTCAGTCTATCGACGAAGCTGAACAAACTGAACACATCTTGAAAGTCCGAGTGCATGCAAATTTTTGCATGCGCTGTGGAACTGGTTTTGTGCAAAAGAAAAAACTCAACATGCACCTAGAGAAGAACGAGTGCACTGCAAATACCTGTGGAAGTGAAACCCCACTTACATGTAGCATTTGTGGTCGGGGCTTCTTTCGTCGTAATTGTTTGCGCCACCATTTCATGCTTCACGCCCAAACAAAACCTTTTAAGTGTAAAAAATGCTCCCGTTCTTTTACCACTCAAAGGGATCTTTACAAACATTACCGAACGCACAAGGACTATAGACCATTTATCTGTGAGCTTTGTCCTAAGGCATACCAATTACCGAAACACCTGGCAGCCCACCGACGACGAGATCATGCCCGCGAACGTCCTTATGTTTGTCGTGTATGTCCGAAAAGATTCAATAAGCCTAGGAATCTAATCGCTCACAAAAAAAAACATGCTTCCAAAAAACCCTTTAAATGCAAGTTCTGCAAACTAAGATACGCACAAAATAGCATTCGTAATATACACATGAGAACCCATACCAATTCTGGGGAGTTGAGATTTCTCTGTGAAATTTGCGGATTAACTCATATTCGCTGGATAAAACTTATTCCAGCCTTAGAAAGAAGACAAAGTGATGATAGCATCATCTGTCTTGAGGAAGATGAGTTTGAAAAAGCCAAAGAAAAACCGCGGCAGCAAGGTGGAATTATTCGACGGATGCAATCCTCCGAGTCGTCTGACAGTGTAGAGATAGTAGAGGACCCTCTACAATTCACCATTGATTTGGTTGACGAATAA
Protein Sequence: MPLLPKIRIEEQPSCFIIDSDEETGSEGTQSVENNGTNYTFNDMCEDLLVGVHNPLSTKQVATEKATNKLDDDNNLSLGVNGSRCIQEEEGAGFDDFEFEFQSIDEAEQTEHILKVRVHANFCMRCGTGFVQKKKLNMHLEKNECTANTCGSETPLTCSICGRGFFRRNCLRHHFMLHAQTKPFKCKKCSRSFTTQRDLYKHYRTHKDYRPFICELCPKAYQLPKHLAAHRRRDHARERPYVCRVCPKRFNKPRNLIAHKKKHASKKPFKCKFCKLRYAQNSIRNIHMRTHTNSGELRFLCEICGLTHIRWIKLIPALERRQSDDSIICLEEDEFEKAKEKPRQQGGIIRRMQSSESSDSVEIVEDPLQFTIDLVDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00694975;
90% Identity: iTF_00694975;
80% Identity: -