Ecor002895.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000031.1:1608670-1641557[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 15 7.1 0.8 2 21 107 126 106 127 0.94 2 11 0.00043 0.056 14.7 0.4 3 23 134 155 133 155 0.96 3 11 8.9e-05 0.012 16.9 1.5 2 23 187 208 186 208 0.97 4 11 0.03 3.9 9.0 3.3 2 20 210 228 210 230 0.94 5 11 0.019 2.5 9.6 0.1 3 23 839 860 837 860 0.95 6 11 0.027 3.5 9.1 2.3 3 23 889 910 887 910 0.94 7 11 0.037 4.8 8.6 2.5 1 21 926 946 926 947 0.95 8 11 0.00063 0.082 14.2 3.5 3 23 957 977 955 977 0.96 9 11 2.8e-05 0.0037 18.5 5.2 1 23 983 1005 983 1005 0.97 10 11 1e-05 0.0013 19.9 3.0 1 23 1011 1033 1011 1033 0.98 11 11 0.7 91 4.6 1.8 1 20 1039 1058 1039 1060 0.92
Sequence Information
- Coding Sequence
- ATGGAAGCACAGTCTGTAGAAATGGAAGCGGTTGAAATAAAAACTGAACCGTTGGATGACAATGATTTCAATCAAATTGTTCGTGAGGAAGTCATAATTAAGTCTGAAAATGAAATGGACTATTTCCCATCATCACTTGACATTAGAGAACCTGAAGTACAAATATCAGAAGATTGGCTAGTGCCAAAAGAAGAACCATCAACAAAAGATTCCGTCGCCGTGGAAGAACCACACGAATCCTTAACACCTCTAACAAATTTATCTCAAACCGAAGATAGTCTGCGAAGCGAAGAATCCAATATCGAATTAAATTCTAATCAGTGTAAATTTTGTGATATGTTTTTAAAGAGTCGTACAGCTCTTAAACTACACGAACGCAATTGTCAATATAAAAATGATTGTCGTCTATGCGGTCAGAAATTTGTTACATCTTATGCTCTTAGTACTCATTTACAAAAAATACATAATCGCAGAATGGAAAATGCATCACCACAAAAAGAGGCCACACGTACTACTATAGGTCGACCACCGCATATATTTTATGGTCCCTCTGGTAGCCAATGTGATATTTGTAATTTAAAATTTGCAAATTCAAGGGATTTAAATAACCACAAAAAGAAACATAACACTTGTCAGCAATGTGGCGAGATTTGCAAGACTTATGAAGATTTAAAGAAACATACATGTGATAATGTTGTTGTGAAGGAAGAAGAAGATCAAAGTGAAACCGAAACTCCAACAAAGAAAATATTTCGAGCAACTAATAGCATGGTTGTAATTCCAGATAAACAAGTTCATACGCCTTCTAGAAGATCCAAGACTAAAGTTAAAACTGCAAAACCAAAAAAGAAGAAACCTAGAGCGTTATTCCAGGAACATTCAAATGAATCTTCTTCTGAGAATGAACATAAAAAGTTGCCAGTTGACAATAATAATTTAGAACATCTTTCGAGTCCTAAGAGTGGTTTTTCAGTTGTGACCAGAGATACCGATTTTGAAGCATTTGCTCAACAAATGATGAAAGGTTTTGCTGATATTTCCGAACCTTTGGAAAATCTTCCTGAAACAGAATCTATATCAGATCAAATTTTACGAAAATTACTAATATCAGCTAAAGAAGGTGAAAGAAAGCAACAGGGTTATCTTATTAAAAAGAACGAATCAGATGCAGAAGCTGATGCTACCCAGTCTGAAAATGAAAGTGTCAACTCCGACGGAAATGTTTACAAATTACTTCAAAAAACTTTCGTAACTCAATCGGCATTCATCAAAGAAGAACCTCTCGACGACGATGACGATTATGAAGCTAAGGAACCACCCAAACTAAAAATGCCCATACCACTTCCTTTCATCAAAGATGAACCCGAATCACCAGAACCAGAGCAACCTGATAGTGCCACTGATAACACTGATTTATTGCTTGAAGAACTATTCGATCGAAAAGCCAAAAAAGTACGACAAACTAAATTCCCTTTTAATCCCTCTTTCGAGCCAAATGGATTGGGCTTTAAAGTTAAAAAAGAAATCAAAGAACAAAAATTTTTAGATTGTGATAGTAGCAAAACATCATCAACAATAACAAAAACAAAAACAATAACTTCTTCATCACCAAAAAAGAAAAAACGAAAGTATGCTTTGAAAAATAGAGGTTCAATAGGTTCTGTACAAAATGTGGTGGTTAAGGAGAAACCAATCGCACTTGAACTTGGCCATGTTTCAAGACGCAAAGCACTTCCACATAAGATAAAAGATGACGTCTTAGAAAATACCACGAACTTATCAAAAAAAATATGTCTAACTTTTGTTCCTCCAAAAAGCACAAACAGTCCAAATCCAATGCATTTTAAGGCTCCGAATGGAAAATTACCCACTTTAAAGAATTGCGGATTGGATCATTTTGAAACAATTAGCAAACAATCTCAACTGCTTCTAGATGCATGGGCAAAAAAGAAGGCTTCGGCAGCGGCGGCAGCAGCGTTGGCGGTGGCGGTTGACTCTGCCGGTGATGATACACCGTACTCATCCGATTACAACTGCACATCGGGGGATGCAGATCAGATGCAGATGGATTCAGAAAACGCTTGCAGTGGAGGTGACGACGACGAAGCTGCATTAGTCGTAGATGAAACAAATTGTGTTTCAGTGAAGATGGAAGAAGATATTACTTGTAGTTCCACGTCCACATTGAACGGACAAGGTGACATCAACCAACAGCAATTCCAGATTCCTTCGAGTGGAGAATTTGACTTTGAAGATATCATACAGTCAAATAGGTTACCAAATTTCAATAATGTTAACAATGTCATCAAAACCCTCACCGAGGAATATAAAAAAGCCGAGAAAGTCAAGCTCGATGATCCACCTACATTTGTTGAGGCCAAACCAGTATTACCAAAGGCAGAAGTTGACGAAGCAAATAAACCTGCGTCGCTGTTTTTCCCCATGTTGGACGATACACAAGTTTATAATATGGTTGCGAATGCTTTGAATGAGAAATACCGTTATGTTTGGATTTGTCCCGCATGTCCAAGGCAGTATACTCAACTGAGGCCGTTTAAAAAACACCTTCTGACGATACATTTTCAAAATGACAGTGAACTTCAGGGAAAAGCTTTTGAGCTGCGACCTGAGTTAGTGATGGATGCTGGACCCAATGAAACGTTTTGTCATTTATGTCATGTCACACTTGCTGACAATGCCACTTTGCGAAAACATCAACTAGAAATGCACAAAGAACAAGATCTAACACTAAGACAGAAGAAGAAACCGCTACTCCATCGATGTTATATCTGTAGTAAGTTGTGTTCGTCGCGGACCCTGCTGGCGGAGCATATGAAGTCGGATTGTGGTAAAAATCCACAATATGGGTGTAATGTTTGTGATAAGAAATTCCATACGAAAAGTACCTTAAATTTACATAAGACAATGCACACCGGTGAGCTGCCACATTCGTGTAGTTTTTGTCAGAAGAGATTTCGAACGAGAGGTCAGTTGACGGTGCACACTAGGACTCATACCGGCGAGAAACCATTTCCATGCAAAGTTTGTGGTCAATGCTTCACCCATCGAGAAACTCTGATTGCCCATCTATCACGTCACATTGATATGAAACGTTACAAATGTTATGGCTGTGAACAATTCTTCTCATGCATTTCCGGTCTCAAAACACACCGATCCGTACGTCCAGAGACATGTGGCCGTGTTGAATTGAATGCACGTGCAGTTGGCCCTCGAGTGCGAGTCATAAAAGGCAACGTCATTTTTGAACCGCAACCAATTTACAATGCGAGATTAGCAAAAGCTGAAAAACCCCCTTTGGATTCATACATTTTGGATCATAATTACTTTCGAAAGGATCAAACTATACAGACCAACAAGAAAGTCTCTAAACAACAATCGGCGACGATTAAAAGTGAAAATATTACCATTTTCCCACAAACGTAG
- Protein Sequence
- MEAQSVEMEAVEIKTEPLDDNDFNQIVREEVIIKSENEMDYFPSSLDIREPEVQISEDWLVPKEEPSTKDSVAVEEPHESLTPLTNLSQTEDSLRSEESNIELNSNQCKFCDMFLKSRTALKLHERNCQYKNDCRLCGQKFVTSYALSTHLQKIHNRRMENASPQKEATRTTIGRPPHIFYGPSGSQCDICNLKFANSRDLNNHKKKHNTCQQCGEICKTYEDLKKHTCDNVVVKEEEDQSETETPTKKIFRATNSMVVIPDKQVHTPSRRSKTKVKTAKPKKKKPRALFQEHSNESSSENEHKKLPVDNNNLEHLSSPKSGFSVVTRDTDFEAFAQQMMKGFADISEPLENLPETESISDQILRKLLISAKEGERKQQGYLIKKNESDAEADATQSENESVNSDGNVYKLLQKTFVTQSAFIKEEPLDDDDDYEAKEPPKLKMPIPLPFIKDEPESPEPEQPDSATDNTDLLLEELFDRKAKKVRQTKFPFNPSFEPNGLGFKVKKEIKEQKFLDCDSSKTSSTITKTKTITSSSPKKKKRKYALKNRGSIGSVQNVVVKEKPIALELGHVSRRKALPHKIKDDVLENTTNLSKKICLTFVPPKSTNSPNPMHFKAPNGKLPTLKNCGLDHFETISKQSQLLLDAWAKKKASAAAAAALAVAVDSAGDDTPYSSDYNCTSGDADQMQMDSENACSGGDDDEAALVVDETNCVSVKMEEDITCSSTSTLNGQGDINQQQFQIPSSGEFDFEDIIQSNRLPNFNNVNNVIKTLTEEYKKAEKVKLDDPPTFVEAKPVLPKAEVDEANKPASLFFPMLDDTQVYNMVANALNEKYRYVWICPACPRQYTQLRPFKKHLLTIHFQNDSELQGKAFELRPELVMDAGPNETFCHLCHVTLADNATLRKHQLEMHKEQDLTLRQKKKPLLHRCYICSKLCSSRTLLAEHMKSDCGKNPQYGCNVCDKKFHTKSTLNLHKTMHTGELPHSCSFCQKRFRTRGQLTVHTRTHTGEKPFPCKVCGQCFTHRETLIAHLSRHIDMKRYKCYGCEQFFSCISGLKTHRSVRPETCGRVELNARAVGPRVRVIKGNVIFEPQPIYNARLAKAEKPPLDSYILDHNYFRKDQTIQTNKKVSKQQSATIKSENITIFPQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -