Ecor014539.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000189.1:832168-836793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00084 0.11 13.8 1.1 1 23 33 56 33 56 0.96 2 9 0.00054 0.069 14.4 5.2 3 23 64 87 62 87 0.91 3 9 2.8e-05 0.0036 18.5 0.4 2 23 97 121 96 121 0.94 4 9 0.00011 0.015 16.6 3.6 1 23 127 149 127 149 0.96 5 9 0.00037 0.048 15.0 2.6 1 23 155 179 155 179 0.92 6 9 0.00048 0.062 14.6 0.2 1 22 179 200 179 203 0.91 7 9 0.0001 0.013 16.7 3.3 1 23 207 229 207 229 0.98 8 9 2.1e-05 0.0027 18.9 2.3 1 23 236 261 236 261 0.98 9 9 0.0031 0.4 12.1 0.0 3 23 268 291 266 291 0.93
Sequence Information
- Coding Sequence
- ATGCGACCCGAACATAAATATACATCGGATAGTGACCTAGAGAGTGTTTTTTCCAATGCCGAACCATCAGCATCGTCTGCAGAAGCCTCTGAGAAATATGTCTGCAGTTTTGGATGTGGCCAAAAGTTTAAGCGAATGATTCAATTGGACCGTCACGAATATAAACACTCTGGAGTTAGAAAACATGCATGTTTCTATGAGGGATGTTCCAAGACCTACACCAATACTCAACATCTCAAGCGACACATTAAGACTTTCCATGAAAAATCTCCACAAATGAAAAATATTAAGTGCAGCTTTGATTTCTGCGATAAAATGTTTGTTTCTAATGAAAATATGGAAAAACACATTCGAGAAGTTCATGAAAATGCCAAAGTCTATCGATGTCTTCATTGTGATGAGAAATTCACTCAGAGAATCAAGCTGAGGCGACATGAAGTCAAACACACAGGAGTCTATCCTTTTAATTGCTCGAAATGTTCTAAAGGATTTGTCCAGGAATACTTTTTAACACGCCATGTGTGCACCAAAATCCACAAATGCGATCGGTGTGAAGCCACCTTTGAAAAGTGGTCCGCATTGTTGGCACATCGCAAGGAGTTGAACCACCCAATGCTCTATAAGTGTGAACAATGTTCAAAGGAATTCAAGAGCAAATTTTTCTTAGAAGAACACAAGAACAGCCATGCAGATGACAAAGAAGTATTTAAATGTACGTACGAAGACTGTACACGTTTTTATACCTACAAAAGGAATCTATTACAACATATTCGAACAGCTCACGAAGGAAAAAAGATTCCATGTACTTTTGAAGACTGCGCAGTAACATTCTCGGATAAGAGAGCTCTCGATAACCACATAAAAGTAATACATCAAAAAATACAAATAAGAAACTCTAAGACGACGAAGAAGCCACGCTCAAAGCGCAAAGACGCTGGCAAACGGAAGCAATCAACACTATCGAAGCTGTCAGGAGTGTTTATTGAAAAGGAGATAGACAAGCAAATTATGGATGGAACGGCAACAATTGACGTCGATTTGCAAGCATTGCAAGAAGAAATACTGACGGGGATAGAAAATATTGCCAGCGACAATGTAGAGTGA
- Protein Sequence
- MRPEHKYTSDSDLESVFSNAEPSASSAEASEKYVCSFGCGQKFKRMIQLDRHEYKHSGVRKHACFYEGCSKTYTNTQHLKRHIKTFHEKSPQMKNIKCSFDFCDKMFVSNENMEKHIREVHENAKVYRCLHCDEKFTQRIKLRRHEVKHTGVYPFNCSKCSKGFVQEYFLTRHVCTKIHKCDRCEATFEKWSALLAHRKELNHPMLYKCEQCSKEFKSKFFLEEHKNSHADDKEVFKCTYEDCTRFYTYKRNLLQHIRTAHEGKKIPCTFEDCAVTFSDKRALDNHIKVIHQKIQIRNSKTTKKPRSKRKDAGKRKQSTLSKLSGVFIEKEIDKQIMDGTATIDVDLQALQEEILTGIENIASDNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694941;
- 90% Identity
- iTF_00694941;
- 80% Identity
- -