Ecor004311.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000046.1:1163626-1167774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.69 89 4.7 0.4 1 12 16 27 16 29 0.91 2 13 0.024 3.1 9.3 1.1 1 23 364 387 364 387 0.93 3 13 3.4 4.4e+02 2.5 3.8 1 23 396 418 396 418 0.97 4 13 0.00014 0.018 16.3 4.2 1 23 425 447 425 447 0.98 5 13 8.7e-06 0.0011 20.1 0.9 1 23 453 475 453 475 0.98 6 13 0.00015 0.019 16.2 0.9 1 23 482 504 482 504 0.97 7 13 0.00012 0.016 16.5 0.4 1 23 510 532 510 532 0.96 8 13 8.1e-05 0.01 17.0 0.3 1 23 538 560 538 560 0.98 9 13 6.1e-05 0.0079 17.4 0.8 1 23 566 589 566 589 0.95 10 13 5.2e-05 0.0067 17.6 3.7 1 23 595 618 595 618 0.97 11 13 1.6e-05 0.0021 19.2 3.5 1 23 624 646 624 646 0.98 12 13 3.8e-05 0.0049 18.1 0.4 1 23 652 674 652 674 0.96 13 13 0.00097 0.13 13.6 0.9 1 22 680 701 680 704 0.92
Sequence Information
- Coding Sequence
- ATGACTGAAGTAATGGATCGAATAGCACACTATACCAGAGAATTCTTCAAATGTTACCTCTGTAACAAAATCTTTGCCGATGGCGATGAGCCATGGCATATGTTTGAAAAACGACTCACTGAAAATGGCCAAAGTCACACTTCTCTAGCTGCGATTCTTTCCTCGGCGCTGGGAAAGGATTTGGAGGAGCACAGTGTCCATTCGAAATTAATTTGTGATGAATGTAATCTCATCCTATTGGAATATGAACGAATCGAAAAGAGTTTCTATCATTTTCGTGTGAAAATTCTCAACGACTACAATCACACGGCCAAGGAAAACAATTTCGAACCAATATGGTTTGAGATTGGTAACATCGATGATAGTGTTCAGATGATGCAATTGCAAGAAGGGGATGATGGCAATCTCACCAATGAAACTCAAACACTGCAACCCCCGCAGCAACAAGGAATAGTAGAAGAAGAAGCAGAAGGACATGATGAAGAAGATTTCACTCATGAAATGAAACCAGCAATTGTTGAGGGTTTAATTGCTCATGTTCCCATAATGGACAGTCAAGAAATCTCTAATTTGGTGATTGAAGAGAAAGGCGAACAAGAGTACGAAGAAATCCTGCCAGATGATGTTATTGTTCAGGAATTAGATGCCACAGAAACTATTTTAATTGGAAATCCTGAGGAGGATTTAGAAAGTGGAGAAGCGCTGCCGGTGGTTTATGACGAGAAGAATAATTTGCATGTAATTGCTGAAGAAATCCCATATGAGCAAATAATTGAGCAAACTTCTGTAATAAGTTACGACAACAGCATCGATGATGTACATGAATCTGCAATTGATTACAATAGCAGCAATGATGATAATCCTCCAATAATCCCAGAAGATGTACCAATTTCAATAAAAAAACAAAAACGTAATAATCGATCGATTAAACGTGAACAACAAGACCAACAATCGACAGATCAACAACAACTAGGCCTAGAATTTGTATTCACTGGAGCTGTATATTTGTGTGCATTATGCCCGGAGCAAACCGAACACGAACCTATGCTGTTTTCAAATCATTTGAAAACTGTCCACAATTATAAATTCTACGTCTGTGATATTTGCTATAAGGGATTCCATAAACGTAACGAAGTAAGCGAGCATATGGACGAATTTCATGCGAGCGGAGCCGAAGAGGGAGAATTCCATTGTGATAATTGTATGCGGGTCTTTTTGAATCTTCGTCAATTCCGAATACACAAACGCCTACATTACACGTCGACCAAGCAGCACGAGTGTTCGGAGTGTCATAAGAAGTACAGTTCGAAGAATCTGctcgacgagcacatgaacatgcatacaggcaagcggccattcaaatgtgcgtcgtgcagtaaggatttcgcctcgaaatacacgctgcaggctcacatgaaaatccatacgaagcgaccgaggccgtatagttgtgataagtgcgataagtcgtttttgaatcagcaaaacctagttcagcatgcgaaactgcatttgggactgaagacgtttatatgtgaagtgtgtcagaaggcgttcgggacgcagcataatttggatgttcataagattgtgcattcgggcaataagccgtttatatgtcggacgtgcggtaagggcttcgcccgacgagctgagattagggatcatgagaggacgcacactggcgagaggccgttcaagtgtgatttgtgtactctggcctttgcccaacgatccaatttgatgacacacaaaaaagccacccatttaaacgacaagaaacacaagtgcaacctgtgtgacagatcctttaagcggcgacgtttgttggaataccatacccagtcggctcacaccggagaacgaccgcacaagtgtgaggtgtgcagtgccacattcgtctatccggagcatttcaaaaagcacatgcgaattcatagtggagtgaagccatatgcttgcgaagtatgcgggaagatgttcaatagccgtgacaatcgtaatgcccatcgatttatccatagcgagaagaaaccctacgaatgtctggaatgtgggatggggttcatgcggaaaccactgcttttgtcccatatgAAACATACGAAGCATGTGAATGACACAATTATTGTGAATCAACCGCAAATAAGCCACAAAGGAGTGCTGGAAGTATACAAAGAGACGACCGATGAAGAGGAAGACGACTTAGTGCTGGAGACTACTCATCAAGAGGGCGTTGGAGAAGCAGAAGAAGACGCCAACATCGCCGAAGAAGAAGAAGAAGCTGGTTATGATGAAGTTGTGGCATCGGATACGATTCTAGTTGAAGATGGCGATGGACAGTATATCAAGGATGAAGATGGGGAAGTTAAATATTTGCAATTTGCTGAAATGGATAAAGATGGACAAGCCACATTTACTTGGGTTGACATAGCCGAAGATAAGGAAGACGATAATTAA
- Protein Sequence
- MTEVMDRIAHYTREFFKCYLCNKIFADGDEPWHMFEKRLTENGQSHTSLAAILSSALGKDLEEHSVHSKLICDECNLILLEYERIEKSFYHFRVKILNDYNHTAKENNFEPIWFEIGNIDDSVQMMQLQEGDDGNLTNETQTLQPPQQQGIVEEEAEGHDEEDFTHEMKPAIVEGLIAHVPIMDSQEISNLVIEEKGEQEYEEILPDDVIVQELDATETILIGNPEEDLESGEALPVVYDEKNNLHVIAEEIPYEQIIEQTSVISYDNSIDDVHESAIDYNSSNDDNPPIIPEDVPISIKKQKRNNRSIKREQQDQQSTDQQQLGLEFVFTGAVYLCALCPEQTEHEPMLFSNHLKTVHNYKFYVCDICYKGFHKRNEVSEHMDEFHASGAEEGEFHCDNCMRVFLNLRQFRIHKRLHYTSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPFKCASCSKDFASKYTLQAHMKIHTKRPRPYSCDKCDKSFLNQQNLVQHAKLHLGLKTFICEVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCTLAFAQRSNLMTHKKATHLNDKKHKCNLCDRSFKRRRLLEYHTQSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKMFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGVLEVYKETTDEEEDDLVLETTHQEGVGEAEEDANIAEEEEEAGYDEVVASDTILVEDGDGQYIKDEDGEVKYLQFAEMDKDGQATFTWVDIAEDKEDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694891;
- 90% Identity
- iTF_00694891;
- 80% Identity
- -