Ecor022801.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- grau
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000451.1:1645816-1659083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.14 18 6.8 0.1 2 23 251 273 250 273 0.94 2 14 1.8 2.3e+02 3.4 0.2 6 23 282 299 282 299 0.98 3 14 0.00066 0.085 14.2 3.3 1 23 305 328 305 328 0.97 4 14 0.00026 0.033 15.4 1.3 1 23 336 358 336 358 0.94 5 14 9.4e-06 0.0012 20.0 0.3 1 23 366 389 366 389 0.96 6 14 1.7 2.2e+02 3.4 0.1 3 23 397 417 396 417 0.93 7 14 0.027 3.5 9.1 0.3 2 23 426 448 425 448 0.95 8 14 2.1e-05 0.0027 18.9 0.1 1 23 455 478 455 478 0.97 9 14 1e-05 0.0013 19.9 4.9 1 23 484 506 484 506 0.99 10 14 0.00041 0.053 14.8 3.5 1 23 512 535 512 535 0.97 11 14 0.79 1e+02 4.5 1.0 2 21 778 797 777 800 0.93 12 14 0.00033 0.043 15.1 3.7 1 23 832 855 832 855 0.98 13 14 0.0011 0.14 13.5 0.3 1 23 863 885 863 885 0.97 14 14 2.7e-07 3.4e-05 24.8 0.8 1 23 893 916 893 916 0.97
Sequence Information
- Coding Sequence
- ATGTTGTGTCGTTTGTGTTTAAATGATACAAGTGAAACGATACAAATATTTAGCAAAGAAAATATCCTAAAATGTATAATAAAGTTTTTGCAATTAGAGCTATCAGCAGAAGATCCTATATCTAAAGAAATATGCAATCTTTGTTGGCAGCAATTGAAAGGTTTTGAAAAGTTCAGTATTCGAATAGAAGAAGCCCAAAAAACTCTTAGTCAAAAAGTACATACATTGGATAAATATGACAAAAACAGTATGGAAAGTTTAGGTCACGTTAAAGAGGAAGATCAAAAAGCAGAAGACGAATCAATTGGGGATGATTCTTTCGATAACGCTGATATTCTACCTTGTTTAGAAGATGAAGATATTGTCAAATTAGAATTACACAAGGAAGATGAAAATAAATTAAAACTATTAAAGAATAATTCATTTGAGAAAAATGAAAATCCTCCACGACGAAGAATTACTCGACAATCAACTTTAAATAAAACCGATTGTGATAATTTCTCGGACAAAAGAAGAAAACGAAAAACAGTTACTAAATCTGATGAAGATGACAAGGTCAAAAAAACGGAAGATGAAGAAGAGATTATTAATAACACTGGGGTCAATTGCAATACAAACATAAAAACGACTCTTCCGAGAAAAAGTGACGTTGTCGATTCGAAGGAAAAATCTCCCAAGTCCGAAAGATTCCTTAAAGCTATGCAAACTTCTAAGGAATTCGATGAAATCATTCGAAAGCACATGAACTTATCTTGTGATATTTGCTCAATTCAACTTTCCGACTTTGCCGAATTAAAACTACATTTTCGACTTGTTCATAAACGCCGAGGATATGCGGTTTGTTGCAATAAAAGGCTCAACAAACGTGGCCTATTTGTCGACCATATCAACGTGCATAATAATCCTGAATATTTTAAGTGCACAGAGTGCGGAAAAATTCTATCAGATAGAATTTGTCTGCATAAACACATTATATCATTCCATCAGACTGAAGAACTCAAAACATTTCAATGTGATTATTGCCCTAAGAAATTTGCCAAGCAATATCTACTGGATCAGCATAGTGTTAAACATGTTCCGGAAAATGAATTCACTTTCATTTGCAATGAATGTAAAAAGGGGTTCCCAACAAATGCAACTCTAAAAGCACATTTGAAACAAGTCCACACAACAATGTACGACAGGATGTGTGAAATTTGTGCTAAACTTATCCGAGGGAAAGCAGCTTTTAAAAGACATGTTGAAGAACATGAAGGCATTGTTCATCCCCAAGTTCAATGCACACAATGTGGTGCCTGGTTAAAGGATAAGAGAAATCTAAGAAAACACGTTGTGACTCAACACTTAAACGATGATAAAAACTATTCTTGTGATGTATGTGGCAAAAAAGCGCCCTCAAAAGGCGCACTTCAAAGCCACATGAGATATGTTCATCAGTTATCGCGTATTTTTAAATGTACATTTTGTGAAAAGTCATTCAAAAAAACAGATCATCTGAAGGAACATATGGCAACTCACACTGGAGAAGTACTCTATGCATGCCCTTACTGTCCAACAACATTTAATTCCAGGTGTAATATGTATGCTCATCGAAAGAAGAAGCACCGAGAAGAATGGGAAGCTAACAAGGCTCTTACCAAAAAACAACAGAATACGATACAAACTAAAAAAGAACAGCTAACAGCGGATGATCCAGTTTCTAAAGTTATATGTGCTGATTGTTGGCAACATTTGGATGATTTTCAAAAGTTTTGTCTGCAAATCGAAGAAGCCCAAAAATCATTGAAATCATCGGCAGACAATGTAGTGGAGGAAGCTAGAAAGGAATTCGTTAAAGATTTAAGTCCCGTGAAAGAAGAAGAGCAAGCGGAGGAATCTATTGAAGATGGCTGCGATAACGACGATGTGTTGGCGTGTATAGGTGACGATATTTTAAAAATCGAACATAACTCCGATGAAGAGACCAATGCCTCAAAAGCTGCTACATCCGAATCTCGTGAAACAGAATTCATGCCAAGACGAAGTGTAAGAGAAAAAAGAAAGTTGCCAACAAAGGAAACCAATGATAGCCCTGAAACATCTGAATACGACGAAAATGAAGACATGGAAGAGGACGACGAGGAAGAAGAAGAAGAGGAAGACGAAGATGAAGAAGAAAAACAGCTTAAAAAGAAAAGATCCGCCCCAAATGCAAAAAGGAAACGTGAAAGCTCAAAAAAGAATGAACAAAATACCTCGGGCGAGCCCAAACTACCAAGGACAAAAAAGCTCTCAAGAGCCATGCTGCTCGCAAGGGAACAGGATGAAATCATTAAGAAGTACATGAAACTTACTTGCGACATTTGCTCAATTGACCTAACAGATTTCAATGATCTGCAAAATCATTTTCGCTGCATTcacaatcgcacaggatatgctgtttgttgcaagaaaaagcttaaaaatcgtggcctaactgtcgatcatatcaacgcccataatgaccccaattatttcaaATGCCAAGACTGTGGTAAAGTTATGTCTGATAGATTTTGTATGCAAAGGCACATGCTAACGTTCCACCCAACCGAAGAATTGAAAACCTTTCCATGTCTCTACTGCCCTCAAAAATTTGCATCTCAATATCTGCTCGATCTGCATACGATAAAACACGTTCCAGAGGATAAATGCACCTTCATTTGCAAGGACTGTGGAAAGGGATTCCCCACGAACTCAACTCTGAATAGCCACATTAAACGGAAACATTCAACAGCatacgatagaatctatcaaactaaaggaacacgtggcaactcacactggcgaagttctctacacatgtccgcattgtccaacgaagtttaa
- Protein Sequence
- MLCRLCLNDTSETIQIFSKENILKCIIKFLQLELSAEDPISKEICNLCWQQLKGFEKFSIRIEEAQKTLSQKVHTLDKYDKNSMESLGHVKEEDQKAEDESIGDDSFDNADILPCLEDEDIVKLELHKEDENKLKLLKNNSFEKNENPPRRRITRQSTLNKTDCDNFSDKRRKRKTVTKSDEDDKVKKTEDEEEIINNTGVNCNTNIKTTLPRKSDVVDSKEKSPKSERFLKAMQTSKEFDEIIRKHMNLSCDICSIQLSDFAELKLHFRLVHKRRGYAVCCNKRLNKRGLFVDHINVHNNPEYFKCTECGKILSDRICLHKHIISFHQTEELKTFQCDYCPKKFAKQYLLDQHSVKHVPENEFTFICNECKKGFPTNATLKAHLKQVHTTMYDRMCEICAKLIRGKAAFKRHVEEHEGIVHPQVQCTQCGAWLKDKRNLRKHVVTQHLNDDKNYSCDVCGKKAPSKGALQSHMRYVHQLSRIFKCTFCEKSFKKTDHLKEHMATHTGEVLYACPYCPTTFNSRCNMYAHRKKKHREEWEANKALTKKQQNTIQTKKEQLTADDPVSKVICADCWQHLDDFQKFCLQIEEAQKSLKSSADNVVEEARKEFVKDLSPVKEEEQAEESIEDGCDNDDVLACIGDDILKIEHNSDEETNASKAATSESRETEFMPRRSVREKRKLPTKETNDSPETSEYDENEDMEEDDEEEEEEEDEDEEEKQLKKKRSAPNAKRKRESSKKNEQNTSGEPKLPRTKKLSRAMLLAREQDEIIKKYMKLTCDICSIDLTDFNDLQNHFRCIHNRTGYAVCCKKKLKNRGLTVDHINAHNDPNYFKCQDCGKVMSDRFCMQRHMLTFHPTEELKTFPCLYCPQKFASQYLLDLHTIKHVPEDKCTFICKDCGKGFPTNSTLNSHIKRKHSTAYDRIYQTKGTRGNSHWRSSLHMSALSNEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -