Ecor001696.2
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000020.1:1780526-1789905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4e-07 5.2e-05 24.3 1.7 2 23 159 180 159 180 0.97 2 10 3.1e-06 0.0004 21.5 1.6 1 23 186 208 186 208 0.97 3 10 6e-06 0.00077 20.6 0.7 1 23 214 236 214 236 0.96 4 10 1.2e-05 0.0016 19.6 0.8 5 23 248 266 242 267 0.91 5 10 0.00028 0.036 15.4 3.8 1 23 272 294 272 294 0.97 6 10 3.3e-05 0.0043 18.2 3.6 1 23 300 323 300 323 0.98 7 10 0.0057 0.74 11.2 2.3 1 23 329 351 329 351 0.98 8 10 5.4e-05 0.007 17.6 0.7 1 23 356 378 356 378 0.98 9 10 0.00056 0.072 14.4 0.5 2 23 385 409 384 409 0.96 10 10 0.00085 0.11 13.8 0.4 2 23 559 581 558 581 0.93
Sequence Information
- Coding Sequence
- ATGGCAAACTCGCTAGCAAAACGATTCGCCGTGAATCCCATAATCAGGCCCCAGTTGTTTCAGGTTCCTGGCTATAATCTTCCAACTTGTGCCAAATGTTCGGAGCATTTGACCACAAATGGTCTAACTGGTATAACAGCGAATTTTTATCAAACAATTAGACAAGATTTACCAACTACTACAACTACAGTTGCAAATAATACATCCTCAACGACTAATGGTGGTGGCGGGACCACAATACAAgtccaacaaataacccaacagcaacaacagcagcagcaacagcagcagcaacaacaacagcaacaacaaacagcagcaagctcatcaccagacgacgatATAAATAGCCAACAACTAAGTGGTTCTATGTCCAATCAAAACGGCGGCGTGAAAAAAACCGAAACAATGTCATTTGATTTGGAGAAGACCATTCAGACCATAGACGTCGATCTTCTGTTCAACGAAGAAGGAACTTGTCCGCTTTGCTCGAAAACGTTCTCAAGAAAATCATCTCTGCTAACTCATATACGAAATCATTCGGCTGAGAGGAAATTTATTTGCTCATTTTGTCACAAGGGCTTTACACAAGCGGCAAATTTGCGAAATCATGAGCGCATACACACAAATGATAGACCCTATGTCTGCATTGATTGTGGCAAGACTTTTACACAGATAACTAATTTGAATAATCACCGTCGATTGCACACGGGAGAGCGGCCATTTGTATGCATTGAATCAGAATGCGGACGGTCTTTTGCGCAAGTCACAAATCTAAACAATCACATGAAGACCCATCACAAAGTACAGCAATACTGCTGCAATCAATGTTCGAAGAAATTTACCCAAGTGACGTCACTTAATCAGCACCTTCAAGCTCACGCCGGCATAACAGGCTATTATTGCCCTCGATGTCCGGAAAAAACTTTCAAACAGCAATCCCAACTGCATACGCACATGAAATCGCACGGTCTGGCCTTCCCATACGAATGCCAGAAGTGCGATGAGAAATTCTTGCAACAAGCACACCTCGACCAACACAACAAAATGCATGATGAATTTAAATTCAAGTGTGACATGTGTCCGAGCTCCTTTAATCAAGAGGTGCTCCTTAAAAAGCATGTCCAGCGACACATCGAAGGAAGGTACATTACATGTCCGGTAGCTAATTGTAACCAAGCATTCGCCGTTAAACAACACTTATCGAAACATCTTCTTACTCGCCATTCTCACAGTGAACTGCCGCCGCCTAAGCGTTCTAAAAAGCAGCACCACAATCAGCTCCATCAGCCCGTACAAATGATTGGGCAGCCACTGTCAATACAACACCACACACCCGGGCAGCGAGGTCGCCCACCCAAAAAGAAGAACCAACAGCAGCAGCAGCAATTAAATCATTCAAACGTTCAAACAATTAAGATCGAATTGCCATCACAGTTGCAGGATCATGTTGGAGGAGGCGGTGGTGGTGCAACAATACAATTTAATCATATGCAATCACAACAGCAACAACAACAACAAGTAGCTGTTGGCGGCAACCAAGTCAAAACAACAGTCGTGCAACAGGCAGCTTTGATCAACAACAATACAACAAATGGTAATGACCGACATCAACAACAACAACAACAAGAACAAGACCAACACGAGACACAAGTCGAAAGCGGCGATGATCTTAAATGCCAAGATTGCGGTGTATTATTTACAAATGAAAACGAACTGAGGGAGCATATATTCTACAAACATCCCGAGCGGAGATTCATGCAGGTACTATTACAAAACGGACACACTTCGTCCGATGCTAAGAATTTGCTTATATTCAAATATCAATAG
- Protein Sequence
- MANSLAKRFAVNPIIRPQLFQVPGYNLPTCAKCSEHLTTNGLTGITANFYQTIRQDLPTTTTTVANNTSSTTNGGGGTTIQVQQITQQQQQQQQQQQQQQQQQQTAASSSPDDDINSQQLSGSMSNQNGGVKKTETMSFDLEKTIQTIDVDLLFNEEGTCPLCSKTFSRKSSLLTHIRNHSAERKFICSFCHKGFTQAANLRNHERIHTNDRPYVCIDCGKTFTQITNLNNHRRLHTGERPFVCIESECGRSFAQVTNLNNHMKTHHKVQQYCCNQCSKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPYECQKCDEKFLQQAHLDQHNKMHDEFKFKCDMCPSSFNQEVLLKKHVQRHIEGRYITCPVANCNQAFAVKQHLSKHLLTRHSHSELPPPKRSKKQHHNQLHQPVQMIGQPLSIQHHTPGQRGRPPKKKNQQQQQQLNHSNVQTIKIELPSQLQDHVGGGGGGATIQFNHMQSQQQQQQQVAVGGNQVKTTVVQQAALINNNTTNGNDRHQQQQQQEQDQHETQVESGDDLKCQDCGVLFTNENELREHIFYKHPERRFMQVLLQNGHTSSDAKNLLIFKYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01521342;
- 90% Identity
- iTF_00894191;
- 80% Identity
- -