Ecor019101.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupeodes corollae
Gene Symbol
-
Assembly
GCA_945859775.1
Location
CAMAOS010000311.1:517855-531300[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00046 0.059 14.7 3.5 3 23 527 547 525 547 0.96
2 10 0.00013 0.016 16.4 5.8 1 23 553 575 553 575 0.97
3 10 0.0001 0.013 16.7 2.5 1 23 581 603 581 604 0.96
4 10 2e-06 0.00025 22.1 1.0 2 23 617 638 617 638 0.97
5 10 0.00044 0.057 14.7 0.4 2 23 644 665 643 665 0.97
6 10 3.1e-06 0.0004 21.5 1.8 1 23 671 693 671 693 0.96
7 10 5.8e-05 0.0075 17.5 3.2 1 21 699 719 699 721 0.94
8 10 8.6e-07 0.00011 23.2 0.8 1 23 727 749 727 749 0.96
9 10 2.4e-06 0.0003 21.9 3.0 1 23 755 777 755 777 0.99
10 10 7.4e-05 0.0095 17.2 0.2 1 23 782 805 782 805 0.90

Sequence Information

Coding Sequence
ATGGATAAACCGTCCTATCTTCTTGCTGATGGAGATTTCGTTTATCGTGACCAATTCCGGTGTTCAAATGAAGAAGATTATTCAAAAGATTTTAAACAAGAAGTACAAGACTCAAGTGTGGGTGAAGATTTAGAAAATAACCCGATACCTGTATGTAGTGAGGAAAATAAACAAAATCACGACACTTGGCATAGAACATTATCTAAAAGAGCAAGACAAGCTGGCAAAGAATATGTGAATAAGAAAGGAGATCTCATTAAAGCTCGAAAACTCAAAGAGGGATGCTCGGAAAGATGTAGAATGAAATGCAAATCAAAGTTAACTGAACAACAAAGATACGAACTCTTCAATGAGTTCTGGAACATAGATTCTCACAAAGAGAAATGGAAATATCTTGCGATGAAAGTGTTATCTCAGCCAGTCAAAAGCCAAACCACACAGTGGGAATCGAGAAGGAAAGAAAGTCGAACTTATAATTTTCGAGTCGATGGAAAAAACATAATGGTATGCAAACCAATGTTTCTAAACACCCTTGGCATAAATGACGCATGGGTAAGAACAGCATTGCAGAAGCAAGGAAGAAGCAGTATTTTAAAACATGATTTAAAGCGTGGAAAGAACAAGAAATGTAGATTGGACCCAGAGTTAGTTTCTAGTGTCAGACATCATATATCAGCATTTCCAAAAGTTTTTTCCCACCACTACGAAAGCGATACTAATCGAGAATATCTGGATGCAAACCTTGACATCCGGAAAATGTATAGACTTTATAAGAGTTGGGTTTCTGAAAATTATCAAACTCAAATTATCACCGCCAATGAACGACAATACAGGCATATTTTCAATAATGACTTCGATCTGCATTTTTTTAAACCGAATAAAGAAATCGACAACGGTTTCCCGCCAGCAATTATTCGTGGCTTAATTTTACAACAACAATGCAGACGCGCTAAACAACAAAGTGAGGATAACAACAAAGGATACTTCAAAAGCATTGTTTACGTTCCAAAACTGGCTGAGAGTTTTAAGCAAGTTGTCACCAAAAACATCCAAGATGTCCGATTGGCTTTTAAATCTAACCAGACAATTAGACACCTTTTCACCAAACTAAAGACCAAAATAGACAGAGATAAACGCACTGATGTGATTTATAAAATAAACTGCAAAGGTAAACCTGACGAAACATGTAACCTTTGCTACATCGGAACCACCAAACAATTCTTGCGCCAAAGATTGTCCAACCACAAATCTGACATCAAAAACAATAACCTGGCTAAAACCGCATTGGCGGCCCATTCAATAGACAAAGGTCATTCTCCGGATTTCGATTGTGTTAAAGTTCTTCAAACGGAAAAACATACTTCCAAGCGATATACACTCGAAACGCTCCATATCCTGAAAAACAAAAACAATATGAATCGCAAGCAAGACACACAGATAATAAAAAAAGTTACAATAAAACAAGAAAAAGCTGAATTTAACTTCGCCGACAATATTTACACTGCTCCTCCTCCACAACAAGAAAAACGCCAATCAACATTTGATTGTTTCCATCGAATAGAAGATGGAAAATACGGATGTAATTTGTGTGAGAAAACCTTTAAGTCGTCATATCACGTCAAAAGGCACTTCCTATCACATACCCAAGAAAAGGCATTCCATTGCACAATGTGTGAGATGCGATTTAATAGGGCTGATCATTTGAAAAACCACATGACAAAACATAACCCCGTTAAGCCATTCCAATGTGATAGCTGTGGTGCGAGTTATGGTCGTGCGGATCACCTTAAGCGTCACAAAGAAATGCACCATTCAAATGATCCAAATAGTGCTCCAGTAAAAGGGGAAGTTTGCGAATATTGTAATAAGTCATACAGTTCTAAAGCCTATCTACAAAAGCATTTGTTAAAGCACACGGAAAAATGTTGGAAATGCAAACTGTGCTCCGTTGTGTTTGAAACTAACGAAGCCCTCAAGGAACACAGCAAGACACACAGTAAAGATAAACCGTTTCTGTGTTCAGAATGCGGTTTATGTTTTCCAAGGAAGAATTATCTCATCATTCATATGCGAAGGCACAATGGTGAACGCCCGTACAAATGCCAATACTGCGATAAGGGCTTTCCACGTTCTACTGACTTGAAAGCACATGAAAAATGTCACACGGGAGAGAAAACACACTTTTGTAACGTCTGTGGTAAAGGCTTCCCGCGACCGTACAAACTGTCTGTACACATGCGAATTCATACCGGCGAAAAACCCTATCAGTGCATGCACTGTCCAAAGGCCTTCGCACAGTGTAATGATTTGAAAGCACATATTCGACGGCACACTGGAGAGCGATTTAGATGCGAATTATGTGGAGCTGGATTCATACAAAAATACAATTTGACCCAACACAAGGCAGATGCCCATGGCATTATAAATGAGTCTCGTCTAGGTCGAGTGGCTAAGATACCTATTGCTGAGCCGATTGGAGAGACGATGACCTCAGTTATAAATAATTCGGATGAAAAATTACAAATGGGACTTTCAACAAATTTACTATTTCGTGGTGTGGCACTTCATTAA
Protein Sequence
MDKPSYLLADGDFVYRDQFRCSNEEDYSKDFKQEVQDSSVGEDLENNPIPVCSEENKQNHDTWHRTLSKRARQAGKEYVNKKGDLIKARKLKEGCSERCRMKCKSKLTEQQRYELFNEFWNIDSHKEKWKYLAMKVLSQPVKSQTTQWESRRKESRTYNFRVDGKNIMVCKPMFLNTLGINDAWVRTALQKQGRSSILKHDLKRGKNKKCRLDPELVSSVRHHISAFPKVFSHHYESDTNREYLDANLDIRKMYRLYKSWVSENYQTQIITANERQYRHIFNNDFDLHFFKPNKEIDNGFPPAIIRGLILQQQCRRAKQQSEDNNKGYFKSIVYVPKLAESFKQVVTKNIQDVRLAFKSNQTIRHLFTKLKTKIDRDKRTDVIYKINCKGKPDETCNLCYIGTTKQFLRQRLSNHKSDIKNNNLAKTALAAHSIDKGHSPDFDCVKVLQTEKHTSKRYTLETLHILKNKNNMNRKQDTQIIKKVTIKQEKAEFNFADNIYTAPPPQQEKRQSTFDCFHRIEDGKYGCNLCEKTFKSSYHVKRHFLSHTQEKAFHCTMCEMRFNRADHLKNHMTKHNPVKPFQCDSCGASYGRADHLKRHKEMHHSNDPNSAPVKGEVCEYCNKSYSSKAYLQKHLLKHTEKCWKCKLCSVVFETNEALKEHSKTHSKDKPFLCSECGLCFPRKNYLIIHMRRHNGERPYKCQYCDKGFPRSTDLKAHEKCHTGEKTHFCNVCGKGFPRPYKLSVHMRIHTGEKPYQCMHCPKAFAQCNDLKAHIRRHTGERFRCELCGAGFIQKYNLTQHKADAHGIINESRLGRVAKIPIAEPIGETMTSVINNSDEKLQMGLSTNLLFRGVALH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-